SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40410 | AT | Annotation by Michelle Graham. TAIR10: Staphylococcal nuclease homologue | chr2:16873509-16875215 FORWARD LENGTH=332 | SoyBase | E_val: 9.00E-177 | ISS |
| GO:0006308 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA catabolic process | SoyBase | N/A | ISS |
| GO:0006401 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA catabolic process | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0090305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleic acid phosphodiester bond hydrolysis | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| GO:0004520 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endodeoxyribonuclease activity | SoyBase | N/A | ISS |
| GO:0004521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity | SoyBase | N/A | ISS |
| PF00565 | PFAM | Staphylococcal nuclease homologue | JGI | ISS | |
| UniRef100_A1KYZ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ca(2+)-dependent DNase n=1 Tax=Populus tomentosa RepID=A1KYZ0_POPTO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JIC1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIC1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g42840 not represented in the dataset |
Glyma02g42840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g05930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g260600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g42840.2 sequence type=transcript gene model=Glyma02g42840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTTTCTTTTTCTTTTTGCACATTTCCATTTGTAAGTGTTACCCGATCCCAATAATAAAAATACCAGATTCGTTGCCACACCCCTAGGTTTTCTCCCTCTTCATCTCTCCCAATTTCTCTCATCAAAGTTTCAACCTTTGATAAGATTGAATCATGGGGAACGCCCTGAGATTCCTCTACAGCCATTGCTGCAAGCCCACAGCAGCTGGTGATTCTGAATCACTTGGACCACACGGTGTTTCCTCTGCCACCGTTGGTGTTTCAACACTTGCCCATGATCTCTTTCACTTTGACATCACCTCCCAGGTCCCGGAAGGACTCAGCAAGCATGTTGTGTCTTCTAAGAAGGCTCAGGCTAATTGGTATAGAAAGTTAGTAGATGCTTGGAAAGAGGCAAAACCTCCTCCTAAGACACCTGAAGAAGCAGCTAGACTTGTCATTCAGACCTTGAGAAGACATCAAAAAGCAGATGTTGAGGGATTGTTGGCTTTCTATGGTCTTCCTCTACCACACACACTGGTTCAAGGAACTACCCAACCCCTTTCATCCTTGCCTGATGGAGTTCAATTTGAAATGCACACCTTGCCGGTTGATGCAAAGGCAGTAGCAGATGGAGACACTATAACTGTGTATGTTAGCACAACAGACCCCAGGGAATCAGCATTTGTCCCTGGAAATGTGCATGCAGCAGCCGTGCGAAGATCAGAAGCGCGTGCACGAAGGAACTTTACAGAAGCGGATGCATTGCACAAACAGATCATTGATTCAGGATATCGGGTGATTCCGGTTCAAAACGAGGAAATTCTAGCCAAGAAGTATAGGATTCGGTTAAGGGGAATTGATGCACCAGAAAGTGCAATGCCATATGGAAAGGAAGCTAAAACTGAACTGACCAAGATTGTTCAAGGCAAGCCTTTGAGGATCCTTGTTTATGAGGAAGATCGTTATGGTCGTTCTGAAATGATGTTAAAGAAAGGTTTAGCATGGCACTACGTAGCATATGACAAACGACCGGAACTGGAAACATGGGAAAAACAAGCCAGAGCAAAGCGTGTTGGATTATGGGCTTCAAAAAATCCTGAGAAGCCATGGGAATGGAGAAAGGACAGACGAGAGGCTGCATGACAACACCTAAAATCAGACTAGCAGCATTATTGCCAAAAGAAATTGAGTCTAGGGCAAAACAAAAGCCCTTCATTCAATATTAGTGTATCATTGTTGTAACAAATTGCATGTATATAAAACAACTGTCAACCAACTAGATCTATTTGTCAATGGAATGCTTGGATTATTAAAAAGTCTGATATTAGACCTCCCAAACAAGTTTTTATCAATAGGCTTGAATACCTGAGATAAGGAGAGAATGAAAATTAAGGACATTACATATATTCAATATATGTTCAATTCATTGCAATGGCTTAATTACTCAGTCTCAACCAATAAAGGTTGGTAAAGTTTGATTCTGTTGTCGATGTGAAAACCTTGTGTTATGGGTAATATGTAAGTATTTATTTAAGTATTCTTTTTAAGTCTTGTGGTCTGTCCTAATTTTAGTGAATTCCTGCA
>Glyma02g42840.1 sequence type=CDS gene model=Glyma02g42840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAACGCCCTGAGATTCCTCTACAGCCATTGCTGCAAGCCCACAGCAGCTGGTGATTCTGAATCACTTGGACCACACGGTGTTTCCTCTGCCACCGTTGGTGTTTCAACACTTGCCCATGATCTCTTTCACTTTGACATCACCTCCCAGGTCCCGGAAGGACTCAGCAAGCATGTTGTGTCTTCTAAGAAGGCTCAGGCTAATTGGTATAGAAAGTTAGTAGATGCTTGGAAAGAGGCAAAACCTCCTCCTAAGACACCTGAAGAAGCAGCTAGACTTGTCATTCAGACCTTGAGAAGACATCAAAAAGCAGATGTTGAGGGATTGTTGGCTTTCTATGGTCTTCCTCTACCACACACACTGGTTCAAGGAACTACCCAACCCCTTTCATCCTTGCCTGATGGAGTTCAATTTGAAATGCACACCTTGCCGGTTGATGCAAAGGCAGTAGCAGATGGAGACACTATAACTGTGTATGTTAGCACAACAGACCCCAGGGAATCAGCATTTGTCCCTGGAAATGTGCATGCAGCAGCCGTGCGAAGATCAGAAGCGCGTGCACGAAGGAACTTTACAGAAGCGGATGCATTGCACAAACAGATCATTGATTCAGGATATCGGGTGATTCCGGTTCAAAACGAGGAAATTCTAGCCAAGAAGTATAGGATTCGGTTAAGGGGAATTGATGCACCAGAAAGTGCAATGCCATATGGAAAGGAAGCTAAAACTGAACTGACCAAGATTGTTCAAGGCAAGCCTTTGAGGATCCTTGTTTATGAGGAAGATCGTTATGGTCGTTCTGTAGGTGATATCTATTGTAATGGCATTTTTGTACAGGAAATGATGTTAAAGAAAGGTTTAGCATGGCACTACGTAGCATATGACAAACGACCGGAACTGGAAACATGGGAAAAACAAGCCAGAGCAAAGCGTGTTGGATTATGGGCTTCAAAAAATCCTGAGAAGCCATGGGAATGGAGAAAGGACAGACGAGAGGCTGCATGA >Glyma02g42840.2 sequence type=CDS gene model=Glyma02g42840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAACGCCCTGAGATTCCTCTACAGCCATTGCTGCAAGCCCACAGCAGCTGGTGATTCTGAATCACTTGGACCACACGGTGTTTCCTCTGCCACCGTTGGTGTTTCAACACTTGCCCATGATCTCTTTCACTTTGACATCACCTCCCAGGTCCCGGAAGGACTCAGCAAGCATGTTGTGTCTTCTAAGAAGGCTCAGGCTAATTGGTATAGAAAGTTAGTAGATGCTTGGAAAGAGGCAAAACCTCCTCCTAAGACACCTGAAGAAGCAGCTAGACTTGTCATTCAGACCTTGAGAAGACATCAAAAAGCAGATGTTGAGGGATTGTTGGCTTTCTATGGTCTTCCTCTACCACACACACTGGTTCAAGGAACTACCCAACCCCTTTCATCCTTGCCTGATGGAGTTCAATTTGAAATGCACACCTTGCCGGTTGATGCAAAGGCAGTAGCAGATGGAGACACTATAACTGTGTATGTTAGCACAACAGACCCCAGGGAATCAGCATTTGTCCCTGGAAATGTGCATGCAGCAGCCGTGCGAAGATCAGAAGCGCGTGCACGAAGGAACTTTACAGAAGCGGATGCATTGCACAAACAGATCATTGATTCAGGATATCGGGTGATTCCGGTTCAAAACGAGGAAATTCTAGCCAAGAAGTATAGGATTCGGTTAAGGGGAATTGATGCACCAGAAAGTGCAATGCCATATGGAAAGGAAGCTAAAACTGAACTGACCAAGATTGTTCAAGGCAAGCCTTTGAGGATCCTTGTTTATGAGGAAGATCGTTATGGTCGTTCTGAAATGATGTTAAAGAAAGGTTTAGCATGGCACTACGTAGCATATGACAAACGACCGGAACTGGAAACATGGGAAAAACAAGCCAGAGCAAAGCGTGTTGGATTATGGGCTTCAAAAAATCCTGAGAAGCCATGGGAATGGAGAAAGGACAGACGAGAGGCTGCATGA
>Glyma02g42840.1 sequence type=predicted peptide gene model=Glyma02g42840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNALRFLYSHCCKPTAAGDSESLGPHGVSSATVGVSTLAHDLFHFDITSQVPEGLSKHVVSSKKAQANWYRKLVDAWKEAKPPPKTPEEAARLVIQTLRRHQKADVEGLLAFYGLPLPHTLVQGTTQPLSSLPDGVQFEMHTLPVDAKAVADGDTITVYVSTTDPRESAFVPGNVHAAAVRRSEARARRNFTEADALHKQIIDSGYRVIPVQNEEILAKKYRIRLRGIDAPESAMPYGKEAKTELTKIVQGKPLRILVYEEDRYGRSVGDIYCNGIFVQEMMLKKGLAWHYVAYDKRPELETWEKQARAKRVGLWASKNPEKPWEWRKDRREAA* >Glyma02g42840.2 sequence type=predicted peptide gene model=Glyma02g42840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNALRFLYSHCCKPTAAGDSESLGPHGVSSATVGVSTLAHDLFHFDITSQVPEGLSKHVVSSKKAQANWYRKLVDAWKEAKPPPKTPEEAARLVIQTLRRHQKADVEGLLAFYGLPLPHTLVQGTTQPLSSLPDGVQFEMHTLPVDAKAVADGDTITVYVSTTDPRESAFVPGNVHAAAVRRSEARARRNFTEADALHKQIIDSGYRVIPVQNEEILAKKYRIRLRGIDAPESAMPYGKEAKTELTKIVQGKPLRILVYEEDRYGRSEMMLKKGLAWHYVAYDKRPELETWEKQARAKRVGLWASKNPEKPWEWRKDRREAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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