Glyma02g42820 - SoyBase

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Report for Sequence Feature Glyma02g42820

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47782992
stop:	47785553
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g42820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56190	AT	Annotation by Michelle Graham. TAIR10: alpha-soluble NSF attachment protein 2 \| chr3:20846119-20848356 REVERSE LENGTH=289	SoyBase	E_val: 9.00E-153	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005483	GO-mf	Annotation by Michelle Graham. GO Molecular Function: soluble NSF attachment protein activity	SoyBase	N/A	ISS
KOG1586	KOG	Protein required for fusion of vesicles in vesicular transport, alpha-SNAP	JGI		ISS
PTHR13768	Panther	SOLUBLE NSF ATTACMENT PROTEIN (SNAP)	JGI		ISS
PTHR13768:SF8	Panther	ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN (SNAP-ALPHA)	JGI		ISS
UniRef100_G7K7B6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-soluble NSF attachment protein n=1 Tax=Medicago truncatula RepID=G7K7B6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JIB9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIB9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g42820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g42820

Paralog	Evidence	Comments
Glyma14g05920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g42820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g260400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g42820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g42820

Limit To All Plant Sequences

>Glyma02g42820.2   sequence type=transcript   gene model=Glyma02g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATCTGTGTCTCAAGTATAAAAGAACAATTAACATAGATAGATTGCATGAAAGAGAGAGCATTAAATTGAATTGATCGATTATTTCATTCATTCCAATATGGGCGATCATTTGGCCAGGGCCGAGGATTTTGAGAACAAGGCAGAGAAGAAACTCAGCAGTTGGGGCTTGTTTGGCTCCAAATTCGAGGACGCTGCTGATCTCTTCGACAAATCCGCCAATTCCTATAAGCTCGCTAAATCATGGGACAAAGCAGGATCCACCTACATCAAATTAGCGAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAAGCTTATGTTGACGCTGCGCGTTGCTATAAAAAAACTAATATAAATGAGTCTGTATCTTGCTTAGACAATGCTGTAAATATTTTCTGTGAGATTGGAAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTGTACGAGTCTGAACAGAATATCTCGCAGGCCGTTGCTTACTATGAAAAATCAGCGGATTTTTTTGAAAATGAAGAAGTGAACACTTCAGCAAACCAGTGCAAGCAAAAAGTTGCTCAATTCTCTGCCCAGCTTGAACAATATCAGAGATCAATTGAGATTTATGAAGATATTGCTCGCCAGTCTCTCAGCAATACTTTGCTGAAGTATGGAGTTAAAGGGCATCTTCTTAATGCTGGCATTTGCGAACTTTGTAAAGGGGATGTTATTGCTATTACCAATGCATTGGAGCGATATCAGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAAGATAAACTCAAAGCCAAAGAAATCGAGGAGGATGATCTTACTTGAATTGCACCATGGTCTTCTTTCGGTTGGATTTCATGTTTGATGATTTGTCTTCTTGTATTATACTTGTTTATCCAATTGTTCATCTTACTGCTAATATAACTGAAGTGATTGACATAAATTCTTGAAATGAATGTTGAGGTAGTTAGAGTATGATCGGATCCACACTTTTATTGGATTTGCATATCTCCATGAGTTGTCATAAAGAGAT

Coding sequences of Glyma02g42820

Limit To All Plant Sequences

>Glyma02g42820.1   sequence type=CDS   gene model=Glyma02g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGATCATTTGGCCAGGGCCGAGGATTTTGAGAACAAGGCAGAGAAGAAACTCAGCAGTTGGGGCTTGTTTGGCTCCAAATTCGAGGACGCTGCTGATCTCTTCGACAAATCCGCCAATTCCTATAAGCTCGCTAAATCATGGGACAAAGCAGGATCCACCTACATCAAATTAGCGAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAAGCTTATGTTGACGCTGCGCGTTGCTATAAAAAAACTAATATAAATGAGTCTGTATCTTGCTTAGACAATGCTGTAAATATTTTCTGTGAGATTGGAAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTGTACGAGTCTGAACAGAATATCTCGCAGGCCGTTGCTTACTATGAAAAATCAGCGGATTTTTTTGAAAATGAAGAAGTGAACACTTCAGCAAACCAGTGCAAGCAAAAAGTTGCTCAATTCTCTGCCCAGCTTGAACAATATCAGAGATCAATTGAGATTTATGAAGATATTGCTCGCCAGTCTCTCAGCAATACTTTGCTGAAGTATGGAGTTAAAGGGCATCTTCTTAATGCTGGCATTTGCGAACTTTGTAAAGGGGATGTTATTGCTATTACCAATGCATTGGAGCGATATCAGGACTTGGATCCAACATTTTCTGGAACACGTGAATATAGACTTCTGGCAGATATTGCTGCTGCAATTGATGAGGAAGATGTTGGAAAGTTTACTGAAGTTATCAAGGAATTTGATAGTTTGACTCCTTTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAAGATAAACTCAAAGCCAAAGAAATCGAGGAGGATGATCTTACTTGA

>Glyma02g42820.2   sequence type=CDS   gene model=Glyma02g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGATCATTTGGCCAGGGCCGAGGATTTTGAGAACAAGGCAGAGAAGAAACTCAGCAGTTGGGGCTTGTTTGGCTCCAAATTCGAGGACGCTGCTGATCTCTTCGACAAATCCGCCAATTCCTATAAGCTCGCTAAATCATGGGACAAAGCAGGATCCACCTACATCAAATTAGCGAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAAGCTTATGTTGACGCTGCGCGTTGCTATAAAAAAACTAATATAAATGAGTCTGTATCTTGCTTAGACAATGCTGTAAATATTTTCTGTGAGATTGGAAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTGTACGAGTCTGAACAGAATATCTCGCAGGCCGTTGCTTACTATGAAAAATCAGCGGATTTTTTTGAAAATGAAGAAGTGAACACTTCAGCAAACCAGTGCAAGCAAAAAGTTGCTCAATTCTCTGCCCAGCTTGAACAATATCAGAGATCAATTGAGATTTATGAAGATATTGCTCGCCAGTCTCTCAGCAATACTTTGCTGAAGTATGGAGTTAAAGGGCATCTTCTTAATGCTGGCATTTGCGAACTTTGTAAAGGGGATGTTATTGCTATTACCAATGCATTGGAGCGATATCAGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAAGATAAACTCAAAGCCAAAGAAATCGAGGAGGATGATCTTACTTGA

Predicted protein sequences of Glyma02g42820

Limit To All Plant Sequences

>Glyma02g42820.1   sequence type=predicted peptide   gene model=Glyma02g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDHLARAEDFENKAEKKLSSWGLFGSKFEDAADLFDKSANSYKLAKSWDKAGSTYIKLASCHLKLESKHEAAQAYVDAARCYKKTNINESVSCLDNAVNIFCEIGRLSMAARYLKEIAELYESEQNISQAVAYYEKSADFFENEEVNTSANQCKQKVAQFSAQLEQYQRSIEIYEDIARQSLSNTLLKYGVKGHLLNAGICELCKGDVIAITNALERYQDLDPTFSGTREYRLLADIAAAIDEEDVGKFTEVIKEFDSLTPLDSWKTTLLLRVKDKLKAKEIEEDDLT*

>Glyma02g42820.2   sequence type=predicted peptide   gene model=Glyma02g42820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDHLARAEDFENKAEKKLSSWGLFGSKFEDAADLFDKSANSYKLAKSWDKAGSTYIKLASCHLKLESKHEAAQAYVDAARCYKKTNINESVSCLDNAVNIFCEIGRLSMAARYLKEIAELYESEQNISQAVAYYEKSADFFENEEVNTSANQCKQKVAQFSAQLEQYQRSIEIYEDIARQSLSNTLLKYGVKGHLLNAGICELCKGDVIAITNALERYQDSWKTTLLLRVKDKLKAKEIEEDDLT*

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