Glyma02g42740 - SoyBase

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Report for Sequence Feature Glyma02g42740

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47727254
stop:	47729397
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g42740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40460	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr2:16897123-16901171 FORWARD LENGTH=583	SoyBase	E_val: 0	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF37	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_G7J2Z4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR3-A n=1 Tax=Medicago truncatula RepID=G7J2Z4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JIB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JIB1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g42740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g42740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g259400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g42740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g42740

Limit To All Plant Sequences

>Glyma02g42740.1   sequence type=CDS   gene model=Glyma02g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTCTATGGAGTTGCTTCCAACTTAATCAATTACCTCACCACCCAACTTCATGAAGATACTGTTTCATCTGTGAGAAATGTGAATAACTCTGGTCAGGATCTGTCAGATTCTTACTTGGGTCGTTTCTGGACATTCGCTCTGTCATCTCTCATTTATGTCTTGGGCATGATTCTTCTCACTTTAGCCGTATCACTCAAGAGCTTGAGGCCAACGTGCACCAACGGCATATGCAACAAGGCTTCAACCTTACAAATTTCATTTTTTTACATGGCACTCTACACTATGGCAGTTGGAGCTGGTGGAACCAAACCCAATATCTCAACCTTTGGTGCAGACCAGTTTGACGACTTTAATCCCAATGAGAAACAGATTAAGGCCTCTTTTTTCATGAGGTGGATGTTCACCTCATTCTTGGGTGCTTTGGTAGCCACTTTAGGTTTAGTCTACATTCAAGAGAATTTTGGATGGGGTCTAGGCTACGGCATCCCAACAATTGGTCTTCTATTGTCCCTTGTAATTTTCTCTATAGGGACTCCAATTTATCGCCACAAAAATAGGGCAGCCAAGAGTCCTGCTAGAGACCTAATTCGTGTCCCAATTGTTGCCTTCAGGAACCGAAAACTGGAACTCCCTATTAACCCTTCATCAGATCTTTATGAGCACGAGCATCAACATTATATTATATTAGTGGTGGAAAAAGGCAATACACCAGCTTTGAGGTTTTTGGACAAGGCTGCAATTAAAGAAAGAAGCAATATTGGTTCCTCAAGAACACCATTGACCGTTACCCAAGTGGAAGGATTCAAGCTTGTCTTTGGCATGGTCCTAATATGGCTTGTCACACTGATTCCTAGCACGATATGGGCACAAATCTACACTCTTTTTTTAAAACAAGGTATAACCTTAGACCGAAAGCTTGGTCCTAATTTTCAAATTCCTGCAGCTTCTCTTGGGAGCTTCGTGACACTCTCTATGCTTCTCTCCGTGCCAATATATGACCGATACTTGGTGCCATTCATGCGTCGAAAAACTGGCAACCCAAGAGGGATCACGTTGCTTCAAAGTCTAGGAATTGGATTTTCAATCCAAATTATGGCCATTGCAATTGCTTATGTAGTTGAAGTTAGAAGAATGCATGTCATAAAAGCAAAGCACGTAGTTGGTCCTAAAGACCTTGTCCCTATGACCGATGTGTTCAATGCAATCGGGTTGCTAGAATTTTTCTATGACCAATCCCCAGAAGACATGAGGAGTCTTGGAACAACGTTCTTCACTAGTGGAATCGGTGTTGGGAACTTCTTGAACAGCTTTTTGGTCACGATGGTTGATAAGATTACAAGGAGTACTGAGTGTGATGAGGCAAAGAGTTGGATAGGTGACAACCTAAACGATTGTCACTTGGATTACTATTATGGGTTTCTATTAGCTCTATCGATTATCAATTTAGGTGCGTTTTTTTGGGTATCAAGAAGATACATTTACAAGAAGGAGATGGGCGAAGATAGTCTTTATGTTCAAGGGGAAGCCAAAGTGTGA

Predicted protein sequences of Glyma02g42740

Limit To All Plant Sequences

>Glyma02g42740.1   sequence type=predicted peptide   gene model=Glyma02g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFYGVASNLINYLTTQLHEDTVSSVRNVNNSGQDLSDSYLGRFWTFALSSLIYVLGMILLTLAVSLKSLRPTCTNGICNKASTLQISFFYMALYTMAVGAGGTKPNISTFGADQFDDFNPNEKQIKASFFMRWMFTSFLGALVATLGLVYIQENFGWGLGYGIPTIGLLLSLVIFSIGTPIYRHKNRAAKSPARDLIRVPIVAFRNRKLELPINPSSDLYEHEHQHYIILVVEKGNTPALRFLDKAAIKERSNIGSSRTPLTVTQVEGFKLVFGMVLIWLVTLIPSTIWAQIYTLFLKQGITLDRKLGPNFQIPAASLGSFVTLSMLLSVPIYDRYLVPFMRRKTGNPRGITLLQSLGIGFSIQIMAIAIAYVVEVRRMHVIKAKHVVGPKDLVPMTDVFNAIGLLEFFYDQSPEDMRSLGTTFFTSGIGVGNFLNSFLVTMVDKITRSTECDEAKSWIGDNLNDCHLDYYYGFLLALSIINLGAFFWVSRRYIYKKEMGEDSLYVQGEAKV*

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