Glyma02g42696 - SoyBase

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Report for Sequence Feature Glyma02g42696

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47710441
stop:	47713403
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g42696

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40480	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr2:16910425-16912444 FORWARD LENGTH=518	SoyBase	E_val: 5.00E-103	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_Q10LQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q10LQ3_ORYSJ	SoyBase	E_val: 8.00E-40	ISS
UniRef100_UPI000233AE5C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AE5C related cluster n=1 Tax=unknown RepID=UPI000233AE5C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g42696

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g42696 not represented in the dataset	Glyma02g42696 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g42696

Paralog	Evidence	Comments
Glyma14g05820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g42696 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g259100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g42696

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g42696

Limit To All Plant Sequences

>Glyma02g42696.1   sequence type=CDS   gene model=Glyma02g42696   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGTCGTCTCCGCCGGCAACGCCGGAACTGAAACCCGAGCTCGGTATCGGATCCGGGTCGGGTCGGAAACCGGGAATAAGGAGAGTGGGTTTGAGAGCTGAAATTGATACTTCGCCGCCTTTTGGGTCTGTCAAGGAAGCGGTGACCCGTTTCGAAACAACCGGACCTTGGATTCCCTTTTACAATTTTGGAGAGGCTTATAACAGTGCTGAAGACTTTGACATAAAGAGAGTGGAGGAGGAAGCAGCGAAGTTGGAAAAGGATTTGATAGTGAAAGAACTCGAAACTCTTGACGTGCTTGAGGAACTGGGAGCTACCAAAGCAATTTTGGAGGAATTAAAGAAGCAGCTACAATCAGAAGCATTGAATTGTTTTGCAACTCCGGGTGGGAATTCATGTGAACAGATTGGAGTTCCTGTTAAAAATTGTGTGAATGATATTAACAATGAGGAGCAGGCATTACAATGTAGGAGCCCGTGGGCTACTTTATCACCTGATCTGTTCATGATGGAGTTAAGACAAGCTAAAATGAGCCTTGGTAAAACTATAAGTGATCTCAGGGCGATACAGTCTTCTGTTGAAGCTTTGAATAAGAAGATGAAGAAGGATAGGCTTTTTGTTGAGAGGACCCGTGAGAAGCTAGCATCAAAGTTTGCTGCTGTATCTGCTCAAGAAGTGGCCAGAAAAGAAGCAAGGTTAACTCCACCTGAAGCTACTGTAGGAACAAGTTGCACTTGTCATCATCTCCTAAATGTTGGGAGGAGTTTCAAATTTGATACTGGACAGTCAAATGGAATGAGTGAAACAAGAATATCTGAAGTTTCAAGGCCCTTGCCTGAGTTTGGAGAGAATGGATTTAGTATTAAGACTGCTGAGATGAGGTGGTTTGCGGCTAAAAAGATGGAAGAAGCCGCAATAGCAGCAGAAGCTGTTGCTCTTGCTGAGATTGAGGCTCTATGCAGCCCTGAGATATCATCAGAATTTGCTCCTCCAGAATGTCAGAAAATGCCATTTGCCATAGGGGAGTGCTCTCCTCTGCACCCCATAGTTCAAATTCCTCAAGAGTCAACCTTGAAGAAGGTGATAGATTCCAAGTTCCAAGTTGACAAAATAGGTTCTTCTAAATTGACTATTTTGAAAAAATTAGAGGAAGCAACAGAAGAAGTTATACGCAGCAAACAAGTCTTGACTGAGGCATTAAACAGTGTTGAAAGTGCAAACAGAAAGCAACATGCTGCTGAAGAGGCACTTCGGAGATGGATTCCTCAGGATGATCTAATAGGTCAGCCAGTGGATAACTATGTTAAGCCCAAGAAGTTCGATCAATCTGGAAATTGTCATGATTGTCCTCTACCGGATGTAACCAGGTCGATTACAATGAACAACGATCCGAAGCCGATCTTAATGTCTTCAGTTTCAATGAGAGATGTACTTAGCAAAAAGCAAGTTCCTGAAGAATATACTACAACTAAGGAGATGGAAGAGCACTCTGAAAGAAAGGTAGCATTGAGTCAAATGCTTCGAGCATTGAGGCAGGATCAAACTCTGCCTACAATACCAGAGAAAGATGGGAGCAATCAAAGGCAGTTCATAGCACAGAGGAAAAAAATTGGATTCATCCAAATATCACTTCCCTTGGGAAAGCGAAGCAAGAAAAAGGCATGA

Predicted protein sequences of Glyma02g42696

Limit To All Plant Sequences

>Glyma02g42696.1   sequence type=predicted peptide   gene model=Glyma02g42696   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESSPPATPELKPELGIGSGSGRKPGIRRVGLRAEIDTSPPFGSVKEAVTRFETTGPWIPFYNFGEAYNSAEDFDIKRVEEEAAKLEKDLIVKELETLDVLEELGATKAILEELKKQLQSEALNCFATPGGNSCEQIGVPVKNCVNDINNEEQALQCRSPWATLSPDLFMMELRQAKMSLGKTISDLRAIQSSVEALNKKMKKDRLFVERTREKLASKFAAVSAQEVARKEARLTPPEATVGTSCTCHHLLNVGRSFKFDTGQSNGMSETRISEVSRPLPEFGENGFSIKTAEMRWFAAKKMEEAAIAAEAVALAEIEALCSPEISSEFAPPECQKMPFAIGECSPLHPIVQIPQESTLKKVIDSKFQVDKIGSSKLTILKKLEEATEEVIRSKQVLTEALNSVESANRKQHAAEEALRRWIPQDDLIGQPVDNYVKPKKFDQSGNCHDCPLPDVTRSITMNNDPKPILMSSVSMRDVLSKKQVPEEYTTTKEMEEHSERKVALSQMLRALRQDQTLPTIPEKDGSNQRQFIAQRKKIGFIQISLPLGKRSKKKA*

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