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Report for Sequence Feature Glyma02g42671

Feature Type:gene_model
Chromosome:Gm02
Start:47689003
stop:47691116
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g42671
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50460AT Annotation by Michelle Graham. TAIR10: secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69 SoyBaseE_val: 7.00E-40ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006605GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0015450GO-mf Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity SoyBaseN/AISS
KOG3498 KOG Preprotein translocase, gamma subunit JGI ISS
PTHR12309Panther SEC61 GAMMA SUBUNIT JGI ISS
PF00584PFAM SecE/Sec61-gamma subunits of protein translocation complex JGI ISS
UniRef100_G7KH37UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein SEC61 gamma subunit n=3 Tax=Papilionoideae RepID=G7KH37_MEDTR SoyBaseE_val: 1.00E-40ISS
UniRef100_G7KH37UniRef Annotation by Michelle Graham. Best UniRef hit: Protein transport protein SEC61 gamma subunit n=3 Tax=Papilionoideae RepID=G7KH37_MEDTR SoyBaseE_val: 1.00E-40ISS

Expression Patterns of Glyma02g42671
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g42671 not represented in the dataset
Glyma02g42671 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g42671
ParalogEvidenceComments
Glyma14g05800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g42671 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g258900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g42671
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g42671
>Glyma02g42671.1   sequence type=CDS   gene model=Glyma02g42671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCATTGATTCTGTGTTCGATCCGCTGAGAGAATTCGCAAAGGACAGCGTGAGGCTCGTGAAGCGCTGCCACAAACCCGATCGCAAAGAATTCTCCAAGGTTGCCGTCCGTACTGCAATTGGTTTCGTCGTGATGGGATTCGTCGGTTTCTTCGTGAAGCTCATTTTCATTCCAATTAACAACATCATCGTCGGATCTGGTTAG
Predicted protein sequences of Glyma02g42671
>Glyma02g42671.1   sequence type=predicted peptide   gene model=Glyma02g42671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG*






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