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Report for Sequence Feature Glyma02g42560
Feature Type: gene_model
Chromosome: Gm02
Start: 47602634
stop: 47616038
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g42560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G08530 AT
Annotation by Michelle Graham. TAIR10: Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703
SoyBase E_val: 0 ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0006897 GO-bp
Annotation by Michelle Graham. GO Biological Process: endocytosis
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0030130 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat of trans-Golgi network vesicle
SoyBase N/A ISS
GO:0030132 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: clathrin coat of coated pit
SoyBase N/A ISS
GO:0005198 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural molecule activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG0985
KOG
Vesicle coat protein clathrin, heavy chain
JGI ISS
PTHR10292 Panther
CLATHRIN HEAVY CHAIN
JGI ISS
PF00637 PFAM
Region in Clathrin and VPS
JGI ISS
PF01394 PFAM
Clathrin propeller repeat
JGI ISS
PF09268 PFAM
Clathrin, heavy-chain linker
JGI ISS
UniRef100_G7K259 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Clathrin heavy chain n=1 Tax=Medicago truncatula RepID=G7K259_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002336D15 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002336D15 related cluster n=1 Tax=unknown RepID=UPI0002336D15
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g42560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g42560
Paralog Evidence Comments
Glyma14g06340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g42560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g258200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g42560
Coding sequences of Glyma02g42560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g42560.1 sequence type=CDS gene model=Glyma02g42560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGCCGCGAATGCTCCGATCACCATGAAAGAAGCCCTAACTTTGCCGAGCATTGGCATCAATTCGCAATTCATCACGTTCACGCACGTGACGATGGAATCGGATAAGTATATATGTGTTCGAGAAACCGCTCCACAGAATAGCGTGGTTATCATTGATATGAACATGCCAAATCAACCTTTGAGGAGGCCTATAACTGCGGATTCTGCTCTTATGAATCCGAATTCTAGAATTCTCGCTTTGAAAGCCCAACTGCAAGGGACTACTCAAGATCACCTACAAATATTTAACATTGAGATGAAAGCAAAGATGAAATCATATCAGATGCCTGAGCAGGTAGTTTTTTGGAAGTGGATTAGCCCCAAAATGTTGGGTCTCGTAACTCAGACCTCTGTATACCACTGGTCAATTGAAGGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCTGGTTCTCCTGAGAGGCCGCAATTGGTAAAGGGAAACATGCAACTTTTCTCTGTGGATCAACAACGTAGTCAGGCTCTTGAAGCTCATGCCGCATCATTTGCCCAATTTAAAGTTCCTGGGAATGAAAACCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGCCAAGTTATATCCAAATTGCATGTTATTGAACTCGGTGCACAACCAGGGAAGCCATCATTTACAAAGAAACAAGCTGATCTTTTCTTCCCCCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAATTTGATTTATGTGATTACGAAACTTGGCCTACTATTTGTCTATGATTTGGAGACAGCTACTGCTGTATATAGGAACAGAATCAGTCCAGATCCTATATTTTTGACCTCAGAAGCTACATCTGTGGGAGGCTTTTATGCCATAAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAATTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCTGGTGCTGAGAAGCTGGTAGTGGAACGTTTTCATGAACTGTTTGCCCAAACAAAATATAAGGAAGCTGCAGAGCTTGCAGCTGAATCTCCACAAGGAATCCTTCGAACTCCTGACACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGTTGGGCAAACTCCTCCTTTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGTTGAATGCCTTTGAATCATTAGAATTGTCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCATTTGCTGAGAGGAGGGAGTTTGACAAAATTCTGATTTACTCTAAACAGGTTGGGTACACACCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGACAGATCCGCAGGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGAGAAATCTGATCCGAGAGGCTACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACATGGGTTCCTTCAGACAAAGGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAGCTTTGCGAAAAAGCGGGCCTTTATGTGCGAGCTTTGCAACATTACACAGAATTACCAGACATCAAACGTGTGATTGTTAATTCACATGCAATTGAACCTCAGTCACTTGTAGAGTTTTTTGGTACACTGTCAAAAGAATGGGCATTAGAGTGCATGAAAGACTTACTGCTGGCCAATCTTAGGGGCAACCTACAGATCATTGTGCAGGTTGCTAAAGAATATTGTGAGCAATTGGGTGTTGATGCCTGCATAAAACTTTTTGAGCAATTTAGGTCATATGAAGGACTGTACTTTTTCCTTGGATCATACTTGAGCTCCAGTGAGGATCCTGATATTCACTTTAAGTACATTGAGGCAGCGGCAAAGACTGGTCAAATCAAGGAGGTTGAGCGTGTGACAAGAGAATCAAATTTCTATGATGCTGAGAAAACCAAAAACTTTCTGATGGAGGCTAAGCTTCCAGATGCACGGCCTTTGATTAACGTTTGTGATCGTTTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAACAACATGGTTCGCTACATTGAAGGCTATGTTCAGAAGGTGAACCCAGGGAATGCACCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTCTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGATAGCAACAACAACCCAGAACATTTCCTCACAACCAACCCATACTATGATTCTCGAGTTGTGGGCAAGTATTGTGAGAAACGTGATCCCACCTTAGCAGTTGTAGCTTATCGGCGAGGACAATGTGACGATGAACTTATCAATGTCACCAACAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTTGTTGAGAGAATGGATGGTGATTTGTGGGCTAAAGTTCTTGATCCTGATAATGAATATAGAAGGCAACTTATTGATCAGGTTGTATCTACTGCTTTGCCTGAAAGCTCAAGCCCTGAGCAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCCGATCTGCCTCATGAATTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGAAACTTTAATTTGCAGAATCTTCTTATTTTGACAGCAATAAAGGCTGATCCATCCAGAGTTATGGATTATGTTAATAGATTGGATAATTTTGATGGGCCTGCGGTTGGAGAAATGGCTGTAGAAGCTCAGTTATATGAGGAAGCATTTGCCATTTTTAAGAAGTTCAACTTGAATGTTCAAGCAGTTAATGTGTTGCTTGATAATATTCATAGCATTGATAGAGCTGTTGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTCAGGGATGGGTTAGTAAGTGATGCAATTGAGTCATTTATACGAGCTGATGATGCTACACAATTTTTAGATGTTATCCGTGCTGCTGAAGATGGCAATGTTTACCATGACTTGGTAAAATACTTGCTAATGGTAAGAGGGAAAGCAAAAGAACCCAAGGTCGACAGTGAGCTCATTTATGCATATGCAAAAATTGATAGGCTGAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTTGCTAATCTTCAAAATGTTGGTGACCGGTTGTATGATGAAGCATTATATGAAGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCTATCACACTGGTCAAATTACAACAGTTTCAAGGTGCTGTTGATGCAGCAAGGAAAGCTAACAGTTCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCGGAGGAGTTTCGTTTGGCCCAGATTTGTGGACTCAACATTATTGTTCAGGTGGATGACTTGGAAGAAGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCTCTGATGGAGAGTGGTTTAGGGTTAGAACGGGCACATATGGGCATCTTTACTGAGTTAGGAGTTCTGTACGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATTCCTAAACTCATACGAGCTTGTGATGAACAACAGCATTGGAAAGAACTGACCTATTTGTATATACAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTTAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTTCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAACAACGTATCTGCTGTTAATGAAGCGTTGAATGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCCCAAAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCTATTGCTTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGCGAGCGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCATGTCTATTTGTTTGCTATGATTTGATACGGGCAGACATTGTTCTTGAACTAGCTTGGATGCACAATATGATTGACTTTGCTTTCCCGTATCTATTGCAGTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTGGTGAAGGACAAAATTGAAGCACAAAATGAAGTGAAGGTTAAAGAGCAAGAGGAAAAGGATGTAGTTGCACAACAGAACATGTATGCTCAATTGTTGCCTCTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGCCCAGGAGGTATGGGAGGAGGCTTTGCTCCTCCCCCTCCAATGGGTGGACTGGGGATGCCCCCAATGCCTCCTTATGGCATGCCTCCCATGGGCAGCAGTTTTTGA
Predicted protein sequences of Glyma02g42560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g42560.1 sequence type=predicted peptide gene model=Glyma02g42560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAANAPITMKEALTLPSIGINSQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWISPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTLNAGQVISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYNLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQVGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNSHAIEPQSLVEFFGTLSKEWALECMKDLLLANLRGNLQIIVQVAKEYCEQLGVDACIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMVRYIEGYVQKVNPGNAPLVVGQLLDDECAEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWAKVLDPDNEYRRQLIDQVVSTALPESSSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLRDGLVSDAIESFIRADDATQFLDVIRAAEDGNVYHDLVKYLLMVRGKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLEEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADIVLELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQNEVKVKEQEEKDVVAQQNMYAQLLPLALPAPPMPGMGGPGGMGGGFAPPPPMGGLGMPPMPPYGMPPMGSSF*