Glyma02g42490 - SoyBase

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Report for Sequence Feature Glyma02g42490

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47535262
stop:	47538344
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g42490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11150	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:3492986-3494599 REVERSE LENGTH=371	SoyBase	E_val: 3.00E-97	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
UniRef100_G7K254	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 2-beta-dioxygenase n=1 Tax=Medicago truncatula RepID=G7K254_MEDTR	SoyBase	E_val: 5.00E-139	ISS
UniRef100_I1JI97	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI97_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g42490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g42490

Paralog	Evidence	Comments
Glyma14g06380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g42490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g257900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g42490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g42490

Limit To All Plant Sequences

>Glyma02g42490.1   sequence type=CDS   gene model=Glyma02g42490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTCAGACCTCTTCGGCGGCGCCACCTCAGCTCCGCCGCCAACTCCGGCGGCGCACCATGACAACATCATGTCCTCATCCGACGCCGCCGATGCGCTCTCGCGCCTCCTCCAGCGCCTCCCGCCCACGCTCTCCCTCCCCACGCGCCTCCCCTCGCCTTCCTCCGCAGCCGCCACGTGTCCTCCCTGCCTCTCCCTTAACGACGTCCTCTCCTGCGTTTCCAAACTCGGTTACGCGCAACTCACCGATCACTCAGTCCCCTCCGAACTCGCCAACTCGGCCGAGTCAGAAGCGCTGGCACTATTCGACCTTTCGCAAGACCAGAAGCAGTCCTTGTTCCCCAAAAACTGGCCTCTTGGCTACGGAAACGATGAAGATGAAGACGAAGACGGGGTCGCCGACTCGTTCCGCTTCGACTCGGCGTGCTCTACCGAGTCGAGCGAGTTGGCACTCTTTTCCCTGCGCAAGTTCGCGCGTGAACTGGAGAAGCTGGGTTTAATGATCGTTGATGAGTTAACAAAAGACTTGGGGTGTGAGAACCCGCTGGGTGATGACCCGACCAGGGTATGTTCGGTTATGTGGGTTTCGGAGTCTCTGCCCGGAAACAAATCGGGTGGGTTTTACCCGTTTGTAATCGGGCTGCAGTACCAGATAAGGAATCAGAAATACTCATTGCTGTCGGATTCGGGATGGGTTTCTGTGCTGCCACACGTGGACTCCATTTTGGTCACTTTTGGTGACATTGCTCAGGTGTGGAGCAATGGCAAGTTAAAGAAAGTGAGAGGTAGACCAATGGCTACAGTGGGAGATGAAAATGGTTCGCGCTGCATAACAATGTCATTGCTGATAACTCTTCCTACAGATAGCAGAGTGGCTCCACTCCTTCCCAAGGTAACATGCAACAAGGACCAAAAGGAAGAAGAAATTGAAGGGGAAGAAGAAGAAAACAATGATGGTGGTGATGAAGAACTAGAGAAGAGGGTGTTCAACTCTTTTGACTTTGAGGACTATGCTTGGAGAGTTTACCATGAACGCATCCTTTTCAAAGATCCATTGGATAGGTACCGTGTTGTTTGA

Predicted protein sequences of Glyma02g42490

Limit To All Plant Sequences

>Glyma02g42490.1   sequence type=predicted peptide   gene model=Glyma02g42490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSDLFGGATSAPPPTPAAHHDNIMSSSDAADALSRLLQRLPPTLSLPTRLPSPSSAAATCPPCLSLNDVLSCVSKLGYAQLTDHSVPSELANSAESEALALFDLSQDQKQSLFPKNWPLGYGNDEDEDEDGVADSFRFDSACSTESSELALFSLRKFARELEKLGLMIVDELTKDLGCENPLGDDPTRVCSVMWVSESLPGNKSGGFYPFVIGLQYQIRNQKYSLLSDSGWVSVLPHVDSILVTFGDIAQVWSNGKLKKVRGRPMATVGDENGSRCITMSLLITLPTDSRVAPLLPKVTCNKDQKEEEIEGEEEENNDGGDEELEKRVFNSFDFEDYAWRVYHERILFKDPLDRYRVV*

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