SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05570 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099 | SoyBase | E_val: 0 | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0032259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| KOG1983 | KOG | Tomosyn and related SNARE-interacting proteins | JGI | ISS | |
| PTHR10241 | Panther | TOMOSYN | JGI | ISS | |
| PTHR10241:SF11 | Panther | LETHAL GIANT LARVAE-RELATED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF00957 | PFAM | Synaptobrevin | JGI | ISS | |
| UniRef100_G7K253 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-binding protein 5-like protein n=1 Tax=Medicago truncatula RepID=G7K253_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7K253 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Syntaxin-binding protein 5-like protein n=1 Tax=Medicago truncatula RepID=G7K253_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma02g42481 not represented in the dataset |
Glyma02g42481 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g257800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g42481.1 sequence type=CDS gene model=Glyma02g42481 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTCTCGATTCTTTAACAAATCTCCACCGCAGCAACGCCCTCAGCAACAGGACGTGGCTCAAGAGAGTTTTCCGTCGGGGAATTTTGATCCACGTGTTGTTCTTCACTATGGCGTTCCATCTAATGCGTCTATTCTCGCTTTTGATCACATTCAACGTCTATTAGCAGTGGGAACACTTGATGGAAGGATGAAGGTGTTTGGTGGTGACAATATTGAAGGGACTCTTATCTCTCCCAAGCAAGCATTCTTCAAAAATTTAGAGTTCTTGGAAAATCAAGGTTTTCTTGCCAGCGTCTCAAGTGATAACGAAATACAGGTTTGGGATTTGAAAAGCAAACAAATTGCTTCTGCCTTGCAGTGGGAATCCATCATAACTGCTTTCTCTGTTATTTATGGCACCAGTTACATGTATATTGGAACTGAGCATGGGATGGTATATGTGTTGATGTTCGATTCTGAAGACAGAAAAATTAAAATATTACCCTATTATGTTCCCACAAATGTCATATCTGAAGCGGTTGGGATGTCGCTTGATCATGTTTCAGTTGTCAGAGTTCTCCATCAACCTTCTTCTAATGGAAAAAGACTGCTAATTGCATACGAAAATGGTTTGATGGTACTCTGGGATGCTTCTGAAGATCGAATTGTTCTCATTAGAGGCCACAAGGACATCAAATTGAAGAGAAAAATAGTGACTAGTTATCCAAATGACTCTAGGGTTCAGCTTTCTGATGATAAATTAGACCATGAAGAGGAGGATAAGGAGATAAGCTCTGTATCTTGGGCATCTAATGATGGATCGGTGGTTGTTGTGGGTTATGTAGATGGTGATATAATGTTTTGGGATTTGTCAACTGCTGACTTTCCCCCTGACCAACAAGTTGAAAGATTGTCAAACAATGTTGTCAAGCTTCAATTATCATCAGCTGATAGAAGACTCCCTATTATTGTTCTACATTGGTGTGCCAATAATAGCGGGGGGAAACTTTTTGTCTATGGTGGTCATGAGATTGGATCTGAAGAAGTTCTAACAGTTCTGAGCATTGATTGGTCCTGTGGGATTGAAAATCTTAAGTGTACTGACTGCATAGATGTTACACTTCACGGTTCTTTTGCTGATATGACTTTGTTATCTACTGATTGCCATACAGAAGGAGCTTGTAATATGCTATTTATATTGACCAGTCCTGGACAACTGGATCTTTATGACAATGATTGTTTGTCCTCTACAATTTCTCAGCAAGAAAAGAAGGCTTCTGTTCCCCCAGTGCTGTATCCCATCCTCATACCCACTCTTGAACCACACATGACAACAGCAAGGCTTGATGTGGTATGTCAAGATGTGAAGTCATTTAGAGCCCTGTTCGAGATTCTTGTAGCTGCAAAGCATCGTTCAATACAAAATAAAAAAAGTATTGGTATAAAGTGGCCTTTGACTGGTGGTGTTCTAGGTCAGCCTTTCAAAGAAAACCATCCTATCATTCAAGTATACATAGCAGGTTACCAAGATGGATCTGTTCGGATATGGGATGCTACATATCCTGCTTTTTCACTTGTTTATGACATAAAATCTGAGGTTAATGATATTAACATTGGCAATGCAAGTGCTCCTGTGTCAGCATTGGGTTTTTGCCCTGATACTCTACATCTTGCTGTGGGCGATGAAAGTGGTGTTGTTCGTCTATATGGGCTAATAAGGAGTTCAGATGACTCCACTTTGCACTTCGTGACAGAAAATGGAACTGAAGTTCATAATACGCATAAAGGGGATGGACCTCATTGCAAAGCTGTGTTTTCCCTTCAAAATTCTGCTGTATACAGCCTACAGTTTGCAAACTTTGGAGGGAAGCTTGTTGTCGGATATGAACATGGGCAGGTGGCTATGCTTGATATCAGTTCATCATCAGTTCTGTTTGTTACGAAAACTGAATCTAACACTTCTTCGGCAGTTGTTTCTATGCATGCAAATTTTTCAGACAGCAGCTTAAACAAACCACTGGAATCTGTATCTGATATTTCTGAAAATCCTGGAATGGGACTAGTCTATGTTATGACAAGGGATGAACACTTTGTTGCAATAGATACCATGACAGGGAATATGGCTTGCAGTAGAACAATGAGCCCCAGCGTAAAATCAAATGTAATTTCAATGCACATTATAGATGGTAGTACTTCTGACCTATCTGCTGAAAAACTGACATCCACCTCACCTCAGAAGAGTGATTCAGGAATGCAAGCTAACATCCAATCTGAAAATGCACAAGTTGAAGATGAAAGTGCTGTTACTGTAGAAAATTCATATTTTGGACAGATAATATCAAACTCACTCATTTTACTTTGTTATGAGAATGAATTGAGCCTACACTCTTTAAATTTTGTGATTGAGGGTAGCAGTAAGTACATACGAAAGGTGAACCTTGTACAACGATGCTGCTGGACTACAACTTTCAAGAAAGATGAGAAAGAGTGTGTTTTGGTTCTTCTGTATCAAAGTGGAGACATTGAATTAAGGTCCTTGCCAGCTTTGGAAGTGTTGGGAGAAAGCTCTTTAATGTCGATCCTCAGATGGAACTTGGAAACCAACATGGTGAAGACGATATGTTCTTCATCAAATGGAAAAATTATTCTGGTCAACGGGAATGAAACTGCTTGCATATCACTGTTGAACTGTGAAAATGAGTTCTGGACTCCAGAGTCTTTTCCTTGTCTTCATGATGAAGTTCTTGCAGCTGCAGTAGATGCTACAGCAAGTCTATCTCCAAAGCAAAATGAAAGAAAGGGAGCATCTTCTATCTTTGTTAATATAGCTAAGAACTTTAAAGCGGGGAATGCGGATCAGAATGCAAATCAATCAGTTCATACTAATAGACTGGAAAATTTAAAACAATTATTCTCCAGTCCTCCTTTCTTAAAGTCTTCCTCGAGCACAGTAGATAAGCAAGATCCTTTTGCGATTGACATAGATGACATTCAAATTGATGAACCTGTAGTCTTCTCATCTCCTCAGAAAATCGATATTGACAAGAGAGATAAAGGGAAAGGAACAGACAGACAGAAATTACTTGAAGAAGCAAGCTCAGACTTGAAACCAAAAGCTAGAACAGCTGAGGAAATTAAGGCTAAATACAGAAAGACGGGCACAGGGGATGCCTCGGCAGCAGCTGCACTTGCAAGGGATAAACTTGTAGAGCGGCAAGAAAAGCTCCAGATACTCAACGAACGTACTGAAGAGTTGCAAAATGGGGCACAAGACTTTGCATCCATGGCAACTGAGCTCGCCAAAAGAATGGAAAATCGTAAATGGTGGCAGTTATGA
>Glyma02g42481.1 sequence type=predicted peptide gene model=Glyma02g42481 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSRFFNKSPPQQRPQQQDVAQESFPSGNFDPRVVLHYGVPSNASILAFDHIQRLLAVGTLDGRMKVFGGDNIEGTLISPKQAFFKNLEFLENQGFLASVSSDNEIQVWDLKSKQIASALQWESIITAFSVIYGTSYMYIGTEHGMVYVLMFDSEDRKIKILPYYVPTNVISEAVGMSLDHVSVVRVLHQPSSNGKRLLIAYENGLMVLWDASEDRIVLIRGHKDIKLKRKIVTSYPNDSRVQLSDDKLDHEEEDKEISSVSWASNDGSVVVVGYVDGDIMFWDLSTADFPPDQQVERLSNNVVKLQLSSADRRLPIIVLHWCANNSGGKLFVYGGHEIGSEEVLTVLSIDWSCGIENLKCTDCIDVTLHGSFADMTLLSTDCHTEGACNMLFILTSPGQLDLYDNDCLSSTISQQEKKASVPPVLYPILIPTLEPHMTTARLDVVCQDVKSFRALFEILVAAKHRSIQNKKSIGIKWPLTGGVLGQPFKENHPIIQVYIAGYQDGSVRIWDATYPAFSLVYDIKSEVNDINIGNASAPVSALGFCPDTLHLAVGDESGVVRLYGLIRSSDDSTLHFVTENGTEVHNTHKGDGPHCKAVFSLQNSAVYSLQFANFGGKLVVGYEHGQVAMLDISSSSVLFVTKTESNTSSAVVSMHANFSDSSLNKPLESVSDISENPGMGLVYVMTRDEHFVAIDTMTGNMACSRTMSPSVKSNVISMHIIDGSTSDLSAEKLTSTSPQKSDSGMQANIQSENAQVEDESAVTVENSYFGQIISNSLILLCYENELSLHSLNFVIEGSSKYIRKVNLVQRCCWTTTFKKDEKECVLVLLYQSGDIELRSLPALEVLGESSLMSILRWNLETNMVKTICSSSNGKIILVNGNETACISLLNCENEFWTPESFPCLHDEVLAAAVDATASLSPKQNERKGASSIFVNIAKNFKAGNADQNANQSVHTNRLENLKQLFSSPPFLKSSSSTVDKQDPFAIDIDDIQIDEPVVFSSPQKIDIDKRDKGKGTDRQKLLEEASSDLKPKARTAEEIKAKYRKTGTGDASAAAALARDKLVERQEKLQILNERTEELQNGAQDFASMATELAKRMENRKWWQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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