Glyma02g42430 - SoyBase

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Report for Sequence Feature Glyma02g42430

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47462858
stop:	47468049
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g42430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08510	AT	Annotation by Michelle Graham. TAIR10: phospholipase C 2 \| chr3:2582626-2585556 REVERSE LENGTH=581	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0051645	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi localization	SoyBase	N/A	ISS
GO:0051646	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion localization	SoyBase	N/A	ISS
GO:0060151	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome localization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004435	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phospholipase C activity	SoyBase	N/A	ISS
GO:0004629	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity	SoyBase	N/A	ISS
GO:0008081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity	SoyBase	N/A	ISS
KOG0169	KOG	Phosphoinositide-specific phospholipase C	JGI		ISS
PTHR10336	Panther	PHOSPHOLIPASE C-RELATED	JGI		ISS
PTHR10336:SF35	Panther	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY P	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF00387	PFAM	Phosphatidylinositol-specific phospholipase C, Y domain	JGI		ISS
PF00388	PFAM	Phosphatidylinositol-specific phospholipase C, X domain	JGI		ISS
PF09279	PFAM	Phosphoinositide-specific phospholipase C, efhand-like	JGI		ISS
UniRef100_I1JI90	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI90_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q43439	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol-specific phospholipase C n=1 Tax=Glycine max RepID=Q43439_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g42430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g42430

Paralog	Evidence	Comments
Glyma14g06450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g42430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g257200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g42430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g42430

Limit To All Plant Sequences

>Glyma02g42430.1   sequence type=CDS   gene model=Glyma02g42430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCGAAGCAGACATACAGCGTGTGCTTCTGCTGGCGACGGCGGTTCAAGCTGGCGCTGGCGGAGGCGCCGTCGGAGATCAAGACCCTCTTCGAGGAGTACTCCGAGAATGAGTTCATGACACCTTCGCATCTCAAAAGGTTTCTCGTGGAAGTGCAAAGGCAAGAGAAGGCCACCGAAGAAGACGCGCAAGCCATCATCGACAGCTTCAGGCATTTCCCTCGCAGAGGCGCTGGCCTCAATCTCGAAACTTTCTTCAAGTACCTCTTCAGTGACGATAACCCCCCTCTTCTTCCTTCTCATGGGGTGCATCATGATATGACTTTACCCTTGTCACATTATTTCATATATACAGGCCATAATTCATATTTAACTGGGAATCAGCTGAGCAGCGACTGCAGTGACGTCCCCATCATAAATGCACTGAAGAGAGGTGTGCGGGTGATTGAATTGGACATATGGCCTAATGCATCAAAGGATAACATAGATGTTCTTCATGGAAGGACATTGACTACTCCTGTAGAGCTCATAAGATGTTTGAGGTCTATTAAGGATCATGCCTTTGTGGCATCAGAATATCCAGTTGTAATAACCCTAGAAGACCACCTTACGCCAGATCTCCAGGCTAAAGTGGCTGAGATGGTTACTGAAACATTTGGAGACATACTATTTACTCCTAACTCAGAAAGTGTGAAGGAATTCCCTTCTCCTGAATCACTTAAAAAGAGAATTATTATATCAACCAAACCACCTAAGGAGTACCTTGAGGCAAAAGAAAAGGAAAAAGGGGATGATTCACAGCACGAAAAGGAGAAAGGGGATGATTCACAGCATGGAAAGGCATTAGGCGAAGATGAAGCTTGGGGGAAGGAAGTCCCAAGCTTGAAAGGTGGTACTATAGAGGATTACAAGGACTACAATGTGGATGAAGATCTTAATGATGAGGAAGAATTTGATGAATCAGACAAGTCACATCATAATGAAGCTCCAGAATATAGACGCCTAATTGCAATTCATGCTGGGAAGCCTAAAGGTGGATTAGCAGAATGCCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGCAACAGCTTGAAAAGGCTGCCATAAATCATGGACAACAAATTGTCAGGTTTACTCAGCGGAATATACTAAGGGTGTATCCAAAAGGTACTCGCATTGACTCATCAAATTATAACCCATTAATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGGAGATCTCTTTGGTTGATGCATGGAATGTTCAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAAATTTTCTATTGGAGACTGGTCCAGATGACGAGGTCTTCAATCCTAAAGCTAAGTTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTACTATGATTTCAAGCATACACACTTTGATCAATATTCACCTCCAGACTTCTACACAAGAGTGGGGATTGCTGGAGTCCCTAATGATACTATAATGAAGAGAACTAAGGCAATAGAGGATAACTGGTTACCTACATGGAATGAGGTATTCGAGTTCCCTCTCACTGTTCCGGAGTTGGCGTTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAGAAAGATGACTTTGGTGGACAAGCATGCCTACCTATCTGGGAGCTTAGAAGTGGCATTCGAGCAATTCCACTGCATAGCCAAAAGGGGGATAAATACAACACTGTAAAGCTTCTCATGCGCTTTGAATTTATTAATAATTGA

Predicted protein sequences of Glyma02g42430

Limit To All Plant Sequences

>Glyma02g42430.1   sequence type=predicted peptide   gene model=Glyma02g42430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSKQTYSVCFCWRRRFKLALAEAPSEIKTLFEEYSENEFMTPSHLKRFLVEVQRQEKATEEDAQAIIDSFRHFPRRGAGLNLETFFKYLFSDDNPPLLPSHGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNASKDNIDVLHGRTLTTPVELIRCLRSIKDHAFVASEYPVVITLEDHLTPDLQAKVAEMVTETFGDILFTPNSESVKEFPSPESLKKRIIISTKPPKEYLEAKEKEKGDDSQHEKEKGDDSQHGKALGEDEAWGKEVPSLKGGTIEDYKDYNVDEDLNDEEEFDESDKSHHNEAPEYRRLIAIHAGKPKGGLAECLKVDPDKVRRLSLSEQQLEKAAINHGQQIVRFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPNFLLETGPDDEVFNPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPNDTIMKRTKAIEDNWLPTWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQACLPIWELRSGIRAIPLHSQKGDKYNTVKLLMRFEFINN*

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