Report for Sequence Feature Glyma02g42410
Feature Type: gene_model
Chromosome: Gm02
Start: 47442816
stop: 47446820
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g42410
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G40116 AT
Annotation by Michelle Graham. TAIR10: Phosphoinositide-specific phospholipase C family protein | chr2:16751782-16754311 FORWARD LENGTH=613
SoyBase E_val: 0 ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0035556 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004435 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phospholipase C activity
SoyBase N/A ISS
GO:0004629 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity
SoyBase N/A ISS
GO:0008081 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity
SoyBase N/A ISS
KOG0169
KOG
Phosphoinositide-specific phospholipase C
JGI ISS
PTHR10336 Panther
PHOSPHOLIPASE C-RELATED
JGI ISS
PTHR10336:SF35 Panther
PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY P
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
PF00387 PFAM
Phosphatidylinositol-specific phospholipase C, Y domain
JGI ISS
PF00388 PFAM
Phosphatidylinositol-specific phospholipase C, X domain
JGI ISS
PF09279 PFAM
Phosphoinositide-specific phospholipase C, efhand-like
JGI ISS
UniRef100_G7KH08 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphoinositide phospholipase C n=1 Tax=Medicago truncatula RepID=G7KH08_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002337A40 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337A40 related cluster n=1 Tax=unknown RepID=UPI0002337A40
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g42410
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g42410
Paralog Evidence Comments
Glyma14g06470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g42410 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g257000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g42410
Coding sequences of Glyma02g42410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g42410.1 sequence type=CDS gene model=Glyma02g42410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAACAACATAGCAACATACAACAAATACAAAAGTTTATTGTTCTTTATCAGAAAGTACAAGTTCACCGAGCTGCTTCTGCGTGCCACCGAACTGCTTCCACCGCAGGACCTCAAGGAGGCGTTTTCAAAGTTCACTGGAGGAGGGTCCTACATGTCCGCGGAGCAGCTCCACGGTTTCCTGATGGAGCATCAGGGGCAAGTGAGAAAGACATGTCAAGAAACTGTTAATAAGGTTGATCAAAATAGAGAACATGAGATCACCCTTGATGAGCTCTTCCGTTTTTTGCTTCATGATGATTCCAACGCTCCCTTGAAAGCCGAGGTACATCATGATATGGGTGCTCCATTGTCACATTATTTCATATATACAGGCCATAACTCCTATTTGACAGGGAATCAACTCAGCAGTGACTGCAGTGAAGAACCAATCATAAAGGCTTTGAAAAGAGGCGTGCGTGTTATTGAACTTGATTTATGGCCAACTTACAATAAGCATGATATTAAAGTAGATCATGGATGGACTCTTGCCAACCCTGCCTCAGTTATTATATGTCTAGAATCCATAAAGGAATATGGTTTTGTTGCATCTCAATACCCAGTGATCATAACTATAGAAGACCATCTTACAACAGATCTTCGAGCTAAATTTGCAGAAATGGCAACTCAAATATTTGGGGAAATGCTTTTTTACCCTGGGGCAGATTGCTCTTGCTTAACAGAATTCCCTTCCCCGGAATCACTAAAAAATCGAGTTATTATATCAACGAAACCCCCGAAAGAACGTTTTAAGTCCTACCGTATCAAGGACAATCCTATGCTAAATGAAAGTGAATCATCTGAAGAAGAATCATGGGAAAATGAATCTCCAGACTCCAATAAGAACGAAGTGGAGACCGAGGACATGAATGGAAGTGATCATGATGAGGGAAATGAAAGTGCATGTGAATGTGCCCGCAAACCATATCAGGTGTGTTCACCTGATTACAAACACATAATCACTATCCATAATACGAAACTCAAGGGTTGCCTGAAGGATAAATTGAAAACAGACGGTGAAGTTAGACGCCTAAGTTGGAGTGAGAAGACCCTTGAAAAGGCTTCAGAATCTCATGGAACAGATATTCTTAGGTTCACACAGAAAAATATCCTCAGGGTTTACCCGAGTGCAATGCGTGTCAAATCCTCAAATTTCAAGCCAAATATTGGGTGGATGTACGGGGCTCAAATGGTTGCATGCAATATGCAGGGGCTTGGCAAATCGCTCTGGTTGATGCAGGGTATGTTCAGGGCAAATGGAGGCTGTGGTTATGTAAAGAAGCCTCAATTTCTAATGCAGAAGTATCACTGTGACAATGAGTTTGATCCTACAAGGATACAGTCAGTGAAGAAGAAGACATTTAAGGTAAAAGTATACATGGGACATGGGTGGAGCTCAGATTTGAGTCCTACACACTTTGATAAGTGCTCTCCGCCAGACTTCTACACTAAGGTTTGTATTGTTGGAATGCCAGATGATGTTGCAAAGAAGAAAACAAAGGTTATGATGGACAATTGGTTTCCTGTTTGGGATGAAGAATTTGAATTCTCTTTAATTGTTCCAGAGCTTGCATTGCTTCTCATACAAGTAAAGGACAAAGATCCTGGAAAGGATGATTTTGCTGGACAGACATGTTTGCCAGTTTCGGAGCTAAAACATGGATTTCATTCAGTCCCTTTATATAACAAAAAGGGAGAGAAATTTAAATCTGTAAAGCCATTGATGCAGTTTCAGTTTGAATGA
Predicted protein sequences of Glyma02g42410
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g42410.1 sequence type=predicted peptide gene model=Glyma02g42410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGNNIATYNKYKSLLFFIRKYKFTELLLRATELLPPQDLKEAFSKFTGGGSYMSAEQLHGFLMEHQGQVRKTCQETVNKVDQNREHEITLDELFRFLLHDDSNAPLKAEVHHDMGAPLSHYFIYTGHNSYLTGNQLSSDCSEEPIIKALKRGVRVIELDLWPTYNKHDIKVDHGWTLANPASVIICLESIKEYGFVASQYPVIITIEDHLTTDLRAKFAEMATQIFGEMLFYPGADCSCLTEFPSPESLKNRVIISTKPPKERFKSYRIKDNPMLNESESSEEESWENESPDSNKNEVETEDMNGSDHDEGNESACECARKPYQVCSPDYKHIITIHNTKLKGCLKDKLKTDGEVRRLSWSEKTLEKASESHGTDILRFTQKNILRVYPSAMRVKSSNFKPNIGWMYGAQMVACNMQGLGKSLWLMQGMFRANGGCGYVKKPQFLMQKYHCDNEFDPTRIQSVKKKTFKVKVYMGHGWSSDLSPTHFDKCSPPDFYTKVCIVGMPDDVAKKKTKVMMDNWFPVWDEEFEFSLIVPELALLLIQVKDKDPGKDDFAGQTCLPVSELKHGFHSVPLYNKKGEKFKSVKPLMQFQFE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
