Report for Sequence Feature Glyma02g42400
Feature Type: gene_model
Chromosome: Gm02
Start: 47433920
stop: 47437769
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g42400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G40095 AT
Annotation by Michelle Graham. TAIR10: Alpha/beta hydrolase related protein | chr2:16743107-16744455 FORWARD LENGTH=209
SoyBase E_val: 3.00E-68 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B9T866 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9T866_RICCO
SoyBase E_val: 2.00E-61 ISS
UniRef100_I1JI86 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI86_SOYBN
SoyBase E_val: 3.00E-145 ISS
Expression Patterns of Glyma02g42400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g42400
Paralog Evidence Comments
Glyma14g06515 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g42400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g256900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g42400
Transcripts of Glyma02g42400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g42400.2 sequence type=transcript gene model=Glyma02g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GCCTCTCTCTCTCTCTCTCTCTTAAGCCTCCCCCTTCATTTTTCTTGTGAATTGCCTTGCACGTGTTTCTTGCCTTCAAACCCTTTGTAAATATAAACAAAAATAGTTTTGAAGCACGTCAAGGATTGGAATCAGGAAAGAAAATGATCATAGTGGCCAACATGGGTTTTTCAAAGGAAGAGAAATCCAAAAGGCTGTTGAGGGGTGTGAAGATTGTGTTCTTCTTGATCACCATGGTTATATCACTGCTTCTTTTCTCTGCCCCGGTTCTCTTGGTTATTGCCGATGCACTTGTTCCTTCAGCTCTACTCTCAGCTTTTTCACCATCTTTTCTCTTCTCCCATTTTGAGAACTACGATTTTGGCTACTCTCTCATTGACATACCTCTAGTATCTATTGCACGATCACTTGTCATCTTCTGTGTGTATAGTTTCTGTGATAGGCCAAGGCTTTCACATGGGCCTTATTTGGGAGTCACCATGTTGTGCTCAGTGATGTCTTTGACATTTGTTTGCTTGAAAGCTGTTTACGTGTTGAGCTTAAACACAAATGTTAGTGGAAGAGAGTCAGGGTATGATAGAAGTTCCCAGATAGCTCTGTTCGTGTGGTCGTGTGCTTTGGCAGTGGGGCATGTCGTTGTTGCCTACAGAACAAGTTGCAGAGAAAGAAGGAAGCTTCTCGTTTACAAGATTGACATTGAAGCTATTTCAGCTTTCAAGAATGGGTATCCGAAGATTTTTCAGGAAGAAAGAGTCAAATGAACCCACTCTATAGTCTGTCTATGACTCAACATTGATGCTTGATGAAATTATATCAATCCAACATAGAGATTTTCAGCTATCACCTTCAGTCAATTATTCATTTTTTGTACTTGGGTGCGGCAACGAAATGCTTAGCTAGGTTAATTTGTCCAATGCATGCATGTCAGTAACCGTAACCCTGACACCTAACACTGGATAGAGAGACGGGTTAAAGCCACGAGGTTACATTTAACACAATAAGCGGTCTATTTTTTGTGTTTACCATTGTTTTTCTAAAGTTTATTTACCCCCTTGTCTTTTGAATATCTTCTTGTACATATAAAAAAGTGAATGAATCTTTTTTTTTCTCTGGCCAAAGGTCTAATGAAAGTATGAATTTAAT
Coding sequences of Glyma02g42400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g42400.1 sequence type=CDS gene model=Glyma02g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCATAGTGGCCAACATGGGTTTTTCAAAGGAAGAGAAATCCAAAAGGCTGTTGAGGGGTGTGAAGATTGTGTTCTTCTTGATCACCATGGTTATATCACTGCTTCTTTTCTCTGCCCCGGTTCTCTTGGTTATTGCCGATGCACTTGTTCCTTCAGCTCTACTCTCAGCTTTTTCACCATCTTTTCTCTTCTCCCATTTTGAGAACTACGATTTTGGCTACTCTCTCATTGACATACCTCTAGTATCTATTGCACGATCACTTGTCATCTTCTGTGTGTATAGTTTCTGTGATAGGCCAAGGCTTTCACATGGGCCTTATTTGGGAGTCACCATGTTGTGCTCAGTGATGTCTTTGACATTTGTTTGCTTGAAAGCTGTTTACGTGTTGAGCTTAAACACAAATGTTAGTGGAAGAGAGTCAGGGTATGATAGAAGTTCCCAGATAGCTCTGTTCGTGTGGTCGTGTGCTTTGGCAGTGGGGCATGTCGTTGTTGCCTACAGAACAAGTTGCAGAGAAAGAAGGAAGCTTCTCGTTTACAAGATTGACATTGAAGCTGTTAATTTGTCCAATGCATGCATGTCAGTAACCGTAACCCTGACACCTAACACTGGATAG
>Glyma02g42400.2 sequence type=CDS gene model=Glyma02g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCATAGTGGCCAACATGGGTTTTTCAAAGGAAGAGAAATCCAAAAGGCTGTTGAGGGGTGTGAAGATTGTGTTCTTCTTGATCACCATGGTTATATCACTGCTTCTTTTCTCTGCCCCGGTTCTCTTGGTTATTGCCGATGCACTTGTTCCTTCAGCTCTACTCTCAGCTTTTTCACCATCTTTTCTCTTCTCCCATTTTGAGAACTACGATTTTGGCTACTCTCTCATTGACATACCTCTAGTATCTATTGCACGATCACTTGTCATCTTCTGTGTGTATAGTTTCTGTGATAGGCCAAGGCTTTCACATGGGCCTTATTTGGGAGTCACCATGTTGTGCTCAGTGATGTCTTTGACATTTGTTTGCTTGAAAGCTGTTTACGTGTTGAGCTTAAACACAAATGTTAGTGGAAGAGAGTCAGGGTATGATAGAAGTTCCCAGATAGCTCTGTTCGTGTGGTCGTGTGCTTTGGCAGTGGGGCATGTCGTTGTTGCCTACAGAACAAGTTGCAGAGAAAGAAGGAAGCTTCTCGTTTACAAGATTGACATTGAAGCTATTTCAGCTTTCAAGAATGGGTATCCGAAGATTTTTCAGGAAGAAAGAGTCAAATGA
Predicted protein sequences of Glyma02g42400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g42400.1 sequence type=predicted peptide gene model=Glyma02g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIIVANMGFSKEEKSKRLLRGVKIVFFLITMVISLLLFSAPVLLVIADALVPSALLSAFSPSFLFSHFENYDFGYSLIDIPLVSIARSLVIFCVYSFCDRPRLSHGPYLGVTMLCSVMSLTFVCLKAVYVLSLNTNVSGRESGYDRSSQIALFVWSCALAVGHVVVAYRTSCRERRKLLVYKIDIEAVNLSNACMSVTVTLTPNTG*
>Glyma02g42400.2 sequence type=predicted peptide gene model=Glyma02g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIIVANMGFSKEEKSKRLLRGVKIVFFLITMVISLLLFSAPVLLVIADALVPSALLSAFSPSFLFSHFENYDFGYSLIDIPLVSIARSLVIFCVYSFCDRPRLSHGPYLGVTMLCSVMSLTFVCLKAVYVLSLNTNVSGRESGYDRSSQIALFVWSCALAVGHVVVAYRTSCRERRKLLVYKIDIEAISAFKNGYPKIFQEERVK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
