Glyma02g42360 - SoyBase

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Report for Sequence Feature Glyma02g42360

Feature Type:	gene_model
Chromosome:	Gm02
Start:	47397199
stop:	47400369
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g42360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40110	AT	Annotation by Michelle Graham. TAIR10: Yippee family putative zinc-binding protein \| chr2:16748159-16749357 FORWARD LENGTH=130	SoyBase	E_val: 4.00E-72	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3399	KOG	Predicted Yippee-type zinc-binding protein	JGI		ISS
PTHR13847	Panther	FAD NAD BINDING OXIDOREDUCTASES	JGI		ISS
PTHR13847:SF40	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03226	PFAM	Yippee putative zinc-binding protein	JGI		ISS
UniRef100_B9SLN0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fad NAD binding oxidoreductases, putative n=1 Tax=Ricinus communis RepID=B9SLN0_RICCO	SoyBase	E_val: 3.00E-78	ISS
UniRef100_I1JI81	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI81_SOYBN	SoyBase	E_val: 1.00E-93	ISS

Expression Patterns of Glyma02g42360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g42360 not represented in the dataset	Glyma02g42360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g42360

Paralog	Evidence	Comments
Glyma14g06540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g42360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g256700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g42360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g42360

Limit To All Plant Sequences

>Glyma02g42360.6   sequence type=transcript   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAAAATAAGACATAATAATAAAGAAATAATTAGAAAGAACACGTCTCGTTGGGTTCTCCTTTGGCAGAAAAAGCGATGATTGATTGCTTCTCTCTATCTCCACATTTCTTGCGTACTCTTCCCTTCCGCACCAAATCAAACCTTTTTCTTAGGTCGTTTATCGAGTTTTCGCTTTGACCCTTTTACCTCTTTGATCTTCTTCAGTGTAGAATTCTCCGAATTGAGGTATGGGGAGGCTGTTTGTGACCCATCTGGAGGGGCAGATCTATAGCTGCAAACACTGCCGCACCCACCTTGCTCTCTATGAAGACATCGTTTCCAAGTCTTTCCACAGCAGACATGGGAGAGCTTATCTCTTCAGTAAGGTCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAGTCATCTGCCATTGACAATTCAATTGTACATTCCTTAATCCCCCTTCTTCTGTTGTTCAATGAATGTTGATCTTATTAGGGCAATTTAGCAACATTAGCTTTTTGCCCAAAAGACAATTGAAATACATTTGTTTGTTAATTCTGATGTAAAAAAAACTATTCTAATCAATGCTGTTTATCTAGTTGTATTATTGATCTTCATTTGCATTTACCATTTGCTAGGAGTTGGCTTTTGGTGTCAAACTCAAGCACTTATGGGGTATTTGGAAGCTTTTCTAAAGAATTTATTTGGACTTGTCTAAATCATATACCACCCCATTTTGAAGTGGATTGGGGTAGAGGGAGGAGAGATATAAAAAGATAAAGTAGAGTGAGAAAATGATAGAGGGGCCCGTTTATTTAAGTTGTTTTTTTTTA

>Glyma02g42360.7   sequence type=transcript   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAAAATAAGACATAATAATAAAGAAATAATTAGAAAGAACACGTCTCGTTGGGTTCTCCTTTGGCAGAAAAAGCGATGATTGATTGCTTCTCTCTATCTCCACATTTCTTGCGTACTCTTCCCTTCCGCACCAAATCAAACCTTTTTCTTAGTGTAGAATTCTCCGAATTGAGGTATGGGGAGGCTGTTTGTGACCCATCTGGAGGGGCAGATCTATAGCTGCAAACACTGCCGCACCCACCTTGCTCTCTATGAAGACATCGTTTCCAAGTCTTTCCACAGCAGACATGGGAGAGCTTATCTCTTCAGTAAGGTCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAGTCATCTGCCATTGACAATTCAATTGTACATTCCTTAATCCCCCTTCTTCTGTTGTTCAATGAATGTTGATCTTATTAGGGCAATTTAGCAACATTAGCTTTTTGCCCAAAAGACAATTGAAATACATTTGTTTGTTAATTCTGATGTAAAAAAAACTATTCTAATCAATGCTGTTTATCTAGTTGTATTATTGATCTTCATTTGCATTTACCATTTGCTAGGAGTTGGCTTTTGGTGTCAAACTCAAGCACTTATGGGGTATTTGGAAGCTTTTCTAAAGAATTTATTTGGACTTGTCTAAATCATATACCACCCCATTTTGAAGTGGATTGGGGTAGAGGGAGGAGAGATATAAAAAGATAAAGTAGAGTGAGAAAATGATAGAGGGGCCCGTTTATTTAAGTTGTTTTTTTTTA

>Glyma02g42360.8   sequence type=transcript   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAAAATAAGACATAATAATAAAGAAATAATTAGAAAGAACACGTCTCGTTGGGTTCTCCTTTGGCAGAAAAAGCGATGATTGATTGCTTCTCTCTATCTCCACATTTCTTGCGTACTCTTCCCTTCCGCACCAAATCAAACCTTTTTCTTAGTGTAGAATTCTCCGAATTGAGGTATGGGGAGGCTGTTTGTGACCCATCTGGAGGGGCAGATCTATAGCTGCAAACACTGCCGCACCCACCTTGCTCTCTATGAAGACATCGTTTCCAAGTCTTTCCACAGCAGACATGGGAGAGCTTATCTCTTCAGTAAGGTGTAAGTTATCCTTGATTTTAGAACCCTATCATTATGTGATTACTAAAACAAAAATTAACATAATTGTTCTCTTCCGGTATTTGTATGATTGTATCTGGACTATCAGTGAGATAAAACTTAGGAACATAGTTGTATGCCCCTTGTATTCTCTAAAAATGAGACAAAAATAAAATTAAAAGAAACTAATGACATTTTATTCATCCAAGAACATTTTTGCTGATATATATTATAGTCCTTGTTTTATGCATGTCCATCATGAATCCTCTCATGCTTGTATTTATGACTTGGCAATAGAAATCATATGTGCATCAGTCGTCATAGCTACATAACAAGAACAATGCATAATTGGTGTCACTCTTATCATCTGACATTTAGGTGATTGTGGATTGTGTATCTTGTAACCAAAGTATCACGGAGAAGAGTTTTGTTTGCTATTCATGCCATGGCTTCTTGCCTCTGGATGTCTAATGCTCTAGCCACGTTATGCTTTACAGTTGGTTCTGTTCATGGATGCAGTTAATATTTTATTCTTTTACAGCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAGTCATCTGCCATTGACAATTCAATTGTACATTCCTTAATCCCCCTTCTTCTGTTGTTCAATGAATGTTGATCTTATTAGGGCAATTTAGCAACATTAGCTTTTTGCCCAAAAGACAATTGAAATACATTTGTTTGTTAATTCTGATGTAAAAAAAACTATTCTAATCAATGCTGTTTATCTAGTTGTATTATTGATCTTCATTTGCATTTACCATTTGCTAGGAGTTGGCTTTTGGTGTCAAACTCAAGCACTTATGGGGTATTTGGAAGCTTTTCTAAAGAATTTATTTGGACTTGTCTAAATCATATACCACCCCATTTTGAAGTGGATTGGGGTAGAGGGAGGAGAGATATAAAAAGATAAAGTAGAGTGAGAAAATGATAGAGGGGCCCGTTTATTTAAGTTGTTTTTTTTTA

>Glyma02g42360.9   sequence type=transcript   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAAAATAAGACATAATAATAAAGAAATAATTAGAAAGAACACGTCTCGTTGGGTTCTCCTTTGGCAGAAAAAGCGATGATTGATTGCTTCTCTCTATCTCCACATTTCTTGCGTACTCTTCCCTTCCGCACCAAATCAAACCTTTTTCTTAGGTCGTTTATCGAGTTTTCGCTTTGACCCTTTTACCTCTTTGATCTTCTTCAGTGTAGAATTCTCCGAATTGAGGTATGGGGAGGCTGTTTGTGACCCATCTGGAGGGGCAGATCTATAGCTGCAAACACTGCCGCACCCACCTTGCTCTCTATGAAGACATCGTTTCCAAGTCTTTCCACAGCAGACATGGGAGAGCTTATCTCTTCAGTAAGGTGTAAGTTATCCTTGATTTTAGAACCCTATCATTATGTGATTACTAAAACAAAAATTAACATAATTGTTCTCTTCCGGTATTTGTATGATTGTATCTGGACTATCAGTGAGATAAAACTTAGGAACATAGTTGTATGCCCCTTGTATTCTCTAAAAATGAGACAAAAATAAAATTAAAAGAAACTAATGACATTTTATTCATCCAAGAACATTTTTGCTGATATATATTATAGTCCTTGTTTTATGCATGTCCATCATGAATCCTCTCATGCTTGTATTTATGACTTGGCAATAGAAATCATATGTGCATCAGTCGTCATAGCTACATAACAAGAACAATGCATAATTGGTGTCACTCTTATCATCTGACATTTAGGTGATTGTGGATTGTGTATCTTGTAACCAAAGTATCACGGAGAAGAGTTTTGTTTGCTATTCATGCCATGGCTTCTTGCCTCTGGATGTCTAATGCTCTAGCCACGTTATGCTTTACAGTTGGTTCTGTTCATGGATGCAGTTAATATTTTATTCTTTTACAGCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAGTCATCTGCCATTGACAATTCAATTGTACATTCCTTAATCCCCCTTCTTCTGTTGTTCAATGAATGTTGATCTTATTAGGGCAATTTAGCAACATTAGCTTTTTGCCCAAAAGACAATTGAAATACATTTGTTTGTTAATTCTGATGTAAAAAAAACTATTCTAATCAATGCTGTTTATCTAGTTGTATTATTGATCTTCATTTGCATTTACCATTTGCTAGGAGTTGGCTTTTGGTGTCAAACTCAAGCACTTATGGGGTATTTGGAAGCTTTTCTAAAGAATTTATTTGGACTTGTCTAAATCATATACCACCCCATTTTGAAGTGGATTGGGGTAGAGGGAGGAGAGATATAAAAAGATAAAGTAGAGTGAGAAAATGATAGAGGGGCCCGTTTATTTAAGTTGTTTTTTTTTA

Coding sequences of Glyma02g42360

Limit To All Plant Sequences

>Glyma02g42360.10   sequence type=CDS   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGTTAATATTTTATTCTTTTACAGCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

>Glyma02g42360.6   sequence type=CDS   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGCTGTTTGTGACCCATCTGGAGGGGCAGATCTATAGCTGCAAACACTGCCGCACCCACCTTGCTCTCTATGAAGACATCGTTTCCAAGTCTTTCCACAGCAGACATGGGAGAGCTTATCTCTTCAGTAAGGTCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

>Glyma02g42360.7   sequence type=CDS   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGCTGTTTGTGACCCATCTGGAGGGGCAGATCTATAGCTGCAAACACTGCCGCACCCACCTTGCTCTCTATGAAGACATCGTTTCCAAGTCTTTCCACAGCAGACATGGGAGAGCTTATCTCTTCAGTAAGGTCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

>Glyma02g42360.8   sequence type=CDS   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGTTAATATTTTATTCTTTTACAGCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

>Glyma02g42360.9   sequence type=CDS   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGTTAATATTTTATTCTTTTACAGCGTGAATGTTACTGTTGGAGTAAATGAGGACAGACAGATGCTCACTGGGATGCATACTGTGGCTGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAGATATGAGACTGCTCATGAAAAAAGCCAGAAGTACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTGTCAGGTCCTGATGGCAATAATAATAATAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCAGATGATGCTTAG

Predicted protein sequences of Glyma02g42360

Limit To All Plant Sequences

>Glyma02g42360.10   sequence type=predicted peptide   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVNILFFYSVNVTVGVNEDRQMLTGMHTVADIFCVGCGSIVGWRYETAHEKSQKYKEGKSVLERYKVSGPDGNNNNNYWVSHEAHVGGSDADDA*

>Glyma02g42360.6   sequence type=predicted peptide   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRLFVTHLEGQIYSCKHCRTHLALYEDIVSKSFHSRHGRAYLFSKVVNVTVGVNEDRQMLTGMHTVADIFCVGCGSIVGWRYETAHEKSQKYKEGKSVLERYKVSGPDGNNNNNYWVSHEAHVGGSDADDA*

>Glyma02g42360.7   sequence type=predicted peptide   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRLFVTHLEGQIYSCKHCRTHLALYEDIVSKSFHSRHGRAYLFSKVVNVTVGVNEDRQMLTGMHTVADIFCVGCGSIVGWRYETAHEKSQKYKEGKSVLERYKVSGPDGNNNNNYWVSHEAHVGGSDADDA*

>Glyma02g42360.8   sequence type=predicted peptide   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVNILFFYSVNVTVGVNEDRQMLTGMHTVADIFCVGCGSIVGWRYETAHEKSQKYKEGKSVLERYKVSGPDGNNNNNYWVSHEAHVGGSDADDA*

>Glyma02g42360.9   sequence type=predicted peptide   gene model=Glyma02g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVNILFFYSVNVTVGVNEDRQMLTGMHTVADIFCVGCGSIVGWRYETAHEKSQKYKEGKSVLERYKVSGPDGNNNNNYWVSHEAHVGGSDADDA*

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