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Report for Sequence Feature Glyma02g41940

Feature Type:gene_model
Chromosome:Gm02
Start:47005076
stop:47007810
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g41940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07410AT Annotation by Michelle Graham. TAIR10: RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214 SoyBaseE_val: 9.00E-130ISS
GO:0006184GO-bp Annotation by Michelle Graham. GO Biological Process: GTP catabolic process SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006913GO-bp Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009504GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell plate SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG0087 KOG GTPase Rab11/YPT3, small G protein superfamily JGI ISS
PTHR24073Panther FAMILY NOT NAMED JGI ISS
PTHR24073:SF213Panther SUBFAMILY NOT NAMED JGI ISS
PF00071PFAM Ras family JGI ISS
UniRef100_C9E9M0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RabA2 n=1 Tax=Phaseolus vulgaris RepID=C9E9M0_PHAVU SoyBaseE_val: 4.00E-132ISS
UniRef100_I1JI35UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI35_SOYBN SoyBaseE_val: 5.00E-159ISS

Expression Patterns of Glyma02g41940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g41940
ParalogEvidenceComments
Glyma14g07040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g41940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g252000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g41940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g41940
>Glyma02g41940.1   sequence type=CDS   gene model=Glyma02g41940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTCAAAGTGGACCATGAATACGATTACCTCTTCAAGGTCGTATTGATTGGGGACTCCGGGGTTGGAAAATCTAACATCCTTTCCAGATTTACGAGAAATGAGTTCTGCTTGGAATCTAAGTCTACCATTGGGGTTGAATTCGCAACCAGAACATTGCAGGTGGAGGGGAAGACTGTGAAGGCACAAATATGGGACACTGCAGGGCAAGAGAGGTACAGAGCCATCACCAGTGCCTACTACAGAGGAGCTGTTGGTGCCTTGTTGGTCTATGACATAACCAAGAGGCAAACATTTGACAATGTGCAGAGGTGGCTTCGGGAACTACGGGACCACGCAGACTCCAACATTGTTATCATGATGGCTGGAAACAAATCTGACCTGAATCATCTGAGAGCAGTGTCTACTGAGGATGCTCAAAGTTTGGCTGAGAGGGAAGGTTTGTCCTTTCTAGAGACTTCAGCATTGGAGGCATACAATGTTGATAAGGCATTTCAAACCATTTTGTTTGATATATATCACATTATAAGTAAAAAGGCACTGGCAGCACAAGAGGCTACTTCCTCTACTGGCCTTCCACAAGGAACTACCATAAATGTCTCGAATATGGCTGGTAATGCCGGCGGCAATAGAAGTTGTTGCTCTAACTAA
Predicted protein sequences of Glyma02g41940
>Glyma02g41940.1   sequence type=predicted peptide   gene model=Glyma02g41940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAQSLAEREGLSFLETSALEAYNVDKAFQTILFDIYHIISKKALAAQEATSSTGLPQGTTINVSNMAGNAGGNRSCCSN*






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