Glyma02g41900 - SoyBase

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Report for Sequence Feature Glyma02g41900

Feature Type:	gene_model
Chromosome:	Gm02
Start:	46975230
stop:	46981583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g41900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28450	AT	Annotation by Michelle Graham. TAIR10: nucleotide binding;protein binding \| chr4:14061724-14064582 REVERSE LENGTH=452	SoyBase	E_val: 0	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0268	KOG	Sof1-like rRNA processing protein (contains WD40 repeats)	JGI		ISS
PTHR22851	Panther	U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF04158	PFAM	Sof1-like domain	JGI		ISS
UniRef100_G7I5C2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DDB1-and CUL4-associated factor n=1 Tax=Medicago truncatula RepID=G7I5C2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JI32	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI32_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g41900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g41900

Paralog	Evidence	Comments
Glyma14g07070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g41900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g251700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g41900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g41900

Limit To All Plant Sequences

>Glyma02g41900.1   sequence type=CDS   gene model=Glyma02g41900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTCAAAGTTATATCACGCTCCGTGGATGAGTTCACCCGAGAGCGAAGTCAAGACCTTCAGAGGGTGTTCCGGAATTACGATCCCAGCCTTCGTCCTCAAGAGAAGGCGGTGGAGTATGTGCGTGCTGTTAATGCGGTGAAGTTGGACAAGATATTTGCAAGACCATTTATTGGAGCATTGGATGGGCATGTAGATGCTGTTTCGTGTATGACGAGGAACCCTAGCCAGTTGAAAGGGATATTCTCCAGTTCGATGGATGGAGATATTCGTCTCTGGGATTTAGCTGCAAGACGGACAGTTTGTCAGTTTCCTGGTCACCGAGGTGCTGTACGAGGCTTGACAGCATCTACAGATGGACGCATTCTTGTGTCATGTGGAACTGATTGCACTATCAGACTCTGGAGTGTTCCTATTACTACTCTTATGGAGTCAGATGACTCAACTAAGAGCACTGTTGAGCCAGCAAGTGTTTATGTTTGGAAGAATGCATTTTGGGGTGCTGATCACCAGTGGGATGGCGAGCATTTTGCCACAGCTGGTGCTCAAGTAGATATATGGAATCACAACAGGTCTCAGCCAATAAACAGTTTTGAATGGGGGTCAGATACTGTAATTTCTGTCCGGTTTAATCCTGGAGAACCAAATCTGTTGGCCACCTCAGCTAGTGACCGGAGCATAATTCTGTATGATTTACGTATGTCTTCCCCAGTGAGGAAAATGATAATGATGACCAAAACAAATTCTATATGTTGGAACCCAATGGAACCCATAAATTTTACGGCTGCAAATGAAGATGGTAACTGCTATAGCTATGATGCTAGGAAGTTAGATGAAGCTAAATGTGTTCACAGAGATCATGTTTCTGCAGTGATGGATGTTGACTACTCACCAACCGGACGGGAGTTTGTCACTGGATCTTATGATAGAACAGTGAGAATTTTCCAGTATAATGGTGGTCACAGCAAGGAGATTTATCATACTAAGAGAATGCAAAGGGTATTTGCTGTCAAGTTCAGTGGTGATGGAAGTTATGTGATTTCAGGAAGTGATGACACTAACCTTAGGCTTTGGAAGGCAAAAGCATCGGAGCAACTTGGAGTAATTCTCCCAAGGGAACGGAAGAAGCATGAGTATCATGAAGCCATAAAAAAACGCTATAAGCACCTCCCTGAAGTTAACCGTATCGCAAGACATAGACACTTGCCAAGACCAATATTCAAAGCTTCTGCTTTAATGCGCGTTATGGCGGATGCTAAGAGAAGGAAGGAAGAGAAGAGGAAAGCTCACAGTGCTCCAGGGAGTATTACAACACAGCCATTACGAAGACGAAGAATTATCAAAGAAGTCGAGTGA

Predicted protein sequences of Glyma02g41900

Limit To All Plant Sequences

>Glyma02g41900.1   sequence type=predicted peptide   gene model=Glyma02g41900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVKVISRSVDEFTRERSQDLQRVFRNYDPSLRPQEKAVEYVRAVNAVKLDKIFARPFIGALDGHVDAVSCMTRNPSQLKGIFSSSMDGDIRLWDLAARRTVCQFPGHRGAVRGLTASTDGRILVSCGTDCTIRLWSVPITTLMESDDSTKSTVEPASVYVWKNAFWGADHQWDGEHFATAGAQVDIWNHNRSQPINSFEWGSDTVISVRFNPGEPNLLATSASDRSIILYDLRMSSPVRKMIMMTKTNSICWNPMEPINFTAANEDGNCYSYDARKLDEAKCVHRDHVSAVMDVDYSPTGREFVTGSYDRTVRIFQYNGGHSKEIYHTKRMQRVFAVKFSGDGSYVISGSDDTNLRLWKAKASEQLGVILPRERKKHEYHEAIKKRYKHLPEVNRIARHRHLPRPIFKASALMRVMADAKRRKEEKRKAHSAPGSITTQPLRRRRIIKEVE*

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