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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05980 | AT | Annotation by Michelle Graham. TAIR10: DHFS-FPGS homolog B | chr5:1799738-1804177 REVERSE LENGTH=513 | SoyBase | E_val: 0 | ISS |
| GO:0006730 | GO-bp | Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0010449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root meristem growth | SoyBase | N/A | ISS |
| GO:0046901 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tetrahydrofolylpolyglutamate biosynthetic process | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004326 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tetrahydrofolylpolyglutamate synthase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| KOG2525 | KOG | Folylpolyglutamate synthase | JGI | ISS | |
| PTHR11136 | Panther | FOLYLPOLYGLUTAMATE SYNTHASE-RELATED | JGI | ISS | |
| PF08245 | PFAM | Mur ligase middle domain | JGI | ISS | |
| UniRef100_G7K218 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Folylpolyglutamate synthase n=1 Tax=Medicago truncatula RepID=G7K218_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336C02 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336C02 related cluster n=1 Tax=unknown RepID=UPI0002336C02 | SoyBase | E_val: 0 | ISS |
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Glyma02g41870 not represented in the dataset |
Glyma02g41870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g07100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g251400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g41870.2 sequence type=transcript gene model=Glyma02g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTTGACCTAGTGAATTGAAAACATCCACATCTCTCCTTCGGTATGCAACTCCAACTGTGACAACAACAATACACTCTGCCACAGTGTAGAGTTAGCGTACTTAGCTGATGAATGATGAAGGTACCCTTCTGTAGTTCTCTCCAACGACAACAGTTGGCCAAAACAAAACAAAAATAAATAGTAAATGAAATTTAACTCAAGACGCTTACCACAAACGACAACTTCTTCTATCTCTTTTCAATCCTTCCATTTTTTCACACACACTCCTATCTACATTCAAACAGCACACTCTCTGTTTCATTCACAATTCAAATCTCAATCACCATGTCTGACCAAGAAGGTGGCAAAGGGTCTCCCAAATCTTCGTCTTTGAGTCCCTATGAAGAAGCAATGGAGGCCTTGTCGTCTTTGATCACTAGACGCACTCGTGCTGATGATAGCAACGTGGGGGATCAGTTCAGCCTGTTATATGATTACCTGAAGATGCTAGAGTTGGAGGAGCCAATTGCAAATATGAAGGTTATCCATGTGGCTGGGACCAAAGGGAAGGGATCTACCTGCACCTTCACGGAATCTATATTGCGTAACTGTGGTTTTCGCACTGGTCTCTTCACATCTCCTCACCTCATTGATATCCGAGAGAGATTTCGTTTAGATGGTATGGAAATTTGTGAAGAGAAATTTTTAGCATACTTCTGGTGGTGTTATGATAGACTAAAGGAAAAAACTGATGACAATATTCCAATGCCTACCTATTTTCGTTTCCTTGCTTTACTTGCCTTTAAGATATTTGCAGCAGAGCAGGTAGATGTTGCTATAATGGAGGTAGGATTAGGTGGAAAATACGATGCAACAAATGTGGTTCAGGCACCTATTGTATGTGGAATAACTTCTCTTGGGTATGACCACATGGAGATTCTTGGGAATACTCTGGGAGAAATTGCCGGTGAGAAGGCTGGTATCTTCAAGAATCGGATTCCAGCTTTTACAGTGCCTCAACCTGATGAAGCAATGCATGTACTTGAAGAGAAGGCTTCTCAATTAAATGTACCTCTTCAAGTGCTAACTCCATTAGATGCCAAATTGCTAAATGGTTTGAGACTTGGTCTTGAAGGCGAGCACCAATATTTAAATGCTGGTCTTGCCATTGCACTGTGCTTTACATGGCTGAAAAGGACTGGGCATGTTGGAGATATTAATTTGGAACAAACTGACACTTTGCCAGAGCAGTTCATAAAAGGGTTAACAAGTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGACCAACACATCAAGAGTGAAAGGTCAAATGAACTTGTTTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGTGTGTGCAAGGTGGTTTTCTCTAGCCATTAAAGAATACAACCCGGACCAAACCTTGTTTCATCAGCAACTTAATAATTCTAAATTGCCACATGAAGTAGTGAAGAGCACACACCACGGCGAAAGAGGATCCCAGAGAAATTCCACTCCGATATTGCTGTTCAATTGTTTGACTGTACGAGATCCACAGTTGCTTCTTCCTCAGCTGATGAAAACATGTGCTGATCATGGTGTCTACTTCAAGAAGGCGCTCTTTGTACCAAGTTTATCTGTGTTTAATAAAGTTGGACCCCAGGCTTTTACACCGGCTGATTCCAAAGTTGATCTGTCATGGCAGTTCAATCTTCAAAGAGTGTGGGAAAATCTCATGCAAGGCAGCAAAGCAGGTAGAAGTACTGACATTGTTTCTGAAGAACTAAAAGATGATATGGAAATGAGTGTCAGTAATTGTGATCATAGTGCAGTGTTTTTGTCATTGCCATTGGCAATCAAATGGCTCAGGGACAGAGTGCAACAAAATCAATCAGTTCGTTTTCAGGTCCTTGTGACTGGCTCTTTACATCTTGTTGGTGACGTGTTGAACTTGGTCAAGAAGTGATTCGTTGGACAAATTTGAAGATTCCTTCGAGATAGAGATTTCCATTCTAAAGCTAAAACAGTCCATAATTTGATGAGTTTTCTCTGGCATTGACACAGTCCATTGCAGGGGTAGTTGTGCACTTTGTTCTGAAAATCCAACACCATTGGACATTCATTTGATACATCCTATATTCAAGAAATGTACATCCAGTTTGATACATCCGGCCCATTGGTTCATTCTCACGTTTTTATATTTGTTTCTTACGTAACAATTTCCCCATATTCAATGATTTAGTAGTTCAAACTTTCAAAATTCAGTTTATAATATTTCAAAATGCAAAAAATAATCATTTTGCATGATTATTATCTCATTTGTTTAATAAA
>Glyma02g41870.1 sequence type=CDS gene model=Glyma02g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACCAAGAAGGTGGCAAAGGGTCTCCCAAATCTTCGTCTTTGAGTCCCTATGAAGAAGCAATGGAGGCCTTGTCGTCTTTGATCACTAGACGCACTCGTGCTGATGATAGCAACGTGGGGGATCAGTTCAGCCTGTTATATGATTACCTGAAGATGCTAGAGTTGGAGGAGCCAATTGCAAATATGAAGGTTATCCATGTGGCTGGGACCAAAGGGAAGGGATCTACCTGCACCTTCACGGAATCTATATTGCGTAACTGTGGTTTTCGCACTGGTCTCTTCACATCTCCTCACCTCATTGATATCCGAGAGAGATTTCGTTTAGATGGTATGGAAATTTGTGAAGAGAAATTTTTAGCATACTTCTGGTGGTGTTATGATAGACTAAAGGAAAAAACTGATGACAATATTCCAATGCCTACCTATTTTCGTTTCCTTGCTTTACTTGCCTTTAAGATATTTGCAGCAGAGCAGGTAGATGTTGCTATAATGGAGGTAGGATTAGGTGGAAAATACGATGCAACAAATGTGGTTCAGGCACCTATTGTATGTGGAATAACTTCTCTTGGGTATGACCACATGGAGATTCTTGGGAATACTCTGGGAGAAATTGCCGGTGAGAAGGCTGGTATCTTCAAGAATCGGATTCCAGCTTTTACAGTGCCTCAACCTGATGAAGCAATGCATGTACTTGAAGAGAAGGCTTCTCAATTAAATGTACCTCTTCAAGTGCTAACTCCATTAGATGCCAAATTGCTAAATGGTTTGAGACTTGGTCTTGAAGGCGAGCACCAATATTTAAATGCTGGTCTTGCCATTGCACTGTGCTTTACATGGCTGAAAAGGACTGGGCATGTTGGAGATATTAATTTGGAACAAACTGACACTTTGCCAGAGCAGTTCATAAAAGGGTTAACAAGTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGACCAACACATCAAGAGTGAAAGGTCAAATGAACTTGTTTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGTGTGTGCAAGGTGGTTTTCTCTAGCCATTAAAGAATACAACCCGGACCAAACCTTGTTTCATCAGCAACTTAATAATTCTAAATTGCCACATGAAGTAGTGAAGAGCACACACCACGGCGAAAGAGGATCCCAGAGAAATTCCACTCCGATATTGCTGTTCAATTGTTTGACTGTACGAGATCCACAGTTGCTTCTTCCTCAGCTGATGAAAACATGTGCTGATCATGGTGTCTACTTCAAGAAGGCGCTCTTTGTACCAAGTTTATCTGTGTTTAATAAAGTTGGACCCCAGGCTTTTACACCGGCTGATTCCAAAGTTGATCTGTCATGGCAGTTCAATCTTCAAAGAGTGTGGGAAAATCTCATGCAAGGCAGCAAAGGTAGAAGTACTGACATTGTTTCTGAAGAACTAAAAGATGATATGGAAATGAGTGTCAGTAATTGTGATCATAGTGCAGTGTTTTTGTCATTGCCATTGGCAATCAAATGGCTCAGGGACAGAGTGCAACAAAATCAATCAGTTCGTTTTCAGGTCCTTGTGACTGGCTCTTTACATCTTGTTGGTGACGTGTTGAACTTGGTCAAGAAGTGA >Glyma02g41870.2 sequence type=CDS gene model=Glyma02g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACCAAGAAGGTGGCAAAGGGTCTCCCAAATCTTCGTCTTTGAGTCCCTATGAAGAAGCAATGGAGGCCTTGTCGTCTTTGATCACTAGACGCACTCGTGCTGATGATAGCAACGTGGGGGATCAGTTCAGCCTGTTATATGATTACCTGAAGATGCTAGAGTTGGAGGAGCCAATTGCAAATATGAAGGTTATCCATGTGGCTGGGACCAAAGGGAAGGGATCTACCTGCACCTTCACGGAATCTATATTGCGTAACTGTGGTTTTCGCACTGGTCTCTTCACATCTCCTCACCTCATTGATATCCGAGAGAGATTTCGTTTAGATGGTATGGAAATTTGTGAAGAGAAATTTTTAGCATACTTCTGGTGGTGTTATGATAGACTAAAGGAAAAAACTGATGACAATATTCCAATGCCTACCTATTTTCGTTTCCTTGCTTTACTTGCCTTTAAGATATTTGCAGCAGAGCAGGTAGATGTTGCTATAATGGAGGTAGGATTAGGTGGAAAATACGATGCAACAAATGTGGTTCAGGCACCTATTGTATGTGGAATAACTTCTCTTGGGTATGACCACATGGAGATTCTTGGGAATACTCTGGGAGAAATTGCCGGTGAGAAGGCTGGTATCTTCAAGAATCGGATTCCAGCTTTTACAGTGCCTCAACCTGATGAAGCAATGCATGTACTTGAAGAGAAGGCTTCTCAATTAAATGTACCTCTTCAAGTGCTAACTCCATTAGATGCCAAATTGCTAAATGGTTTGAGACTTGGTCTTGAAGGCGAGCACCAATATTTAAATGCTGGTCTTGCCATTGCACTGTGCTTTACATGGCTGAAAAGGACTGGGCATGTTGGAGATATTAATTTGGAACAAACTGACACTTTGCCAGAGCAGTTCATAAAAGGGTTAACAAGTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGACCAACACATCAAGAGTGAAAGGTCAAATGAACTTGTTTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGTGTGTGCAAGGTGGTTTTCTCTAGCCATTAAAGAATACAACCCGGACCAAACCTTGTTTCATCAGCAACTTAATAATTCTAAATTGCCACATGAAGTAGTGAAGAGCACACACCACGGCGAAAGAGGATCCCAGAGAAATTCCACTCCGATATTGCTGTTCAATTGTTTGACTGTACGAGATCCACAGTTGCTTCTTCCTCAGCTGATGAAAACATGTGCTGATCATGGTGTCTACTTCAAGAAGGCGCTCTTTGTACCAAGTTTATCTGTGTTTAATAAAGTTGGACCCCAGGCTTTTACACCGGCTGATTCCAAAGTTGATCTGTCATGGCAGTTCAATCTTCAAAGAGTGTGGGAAAATCTCATGCAAGGCAGCAAAGCAGGTAGAAGTACTGACATTGTTTCTGAAGAACTAAAAGATGATATGGAAATGAGTGTCAGTAATTGTGATCATAGTGCAGTGTTTTTGTCATTGCCATTGGCAATCAAATGGCTCAGGGACAGAGTGCAACAAAATCAATCAGTTCGTTTTCAGGTCCTTGTGACTGGCTCTTTACATCTTGTTGGTGACGTGTTGAACTTGGTCAAGAAGTGA
>Glyma02g41870.1 sequence type=predicted peptide gene model=Glyma02g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDQEGGKGSPKSSSLSPYEEAMEALSSLITRRTRADDSNVGDQFSLLYDYLKMLELEEPIANMKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDIRERFRLDGMEICEEKFLAYFWWCYDRLKEKTDDNIPMPTYFRFLALLAFKIFAAEQVDVAIMEVGLGGKYDATNVVQAPIVCGITSLGYDHMEILGNTLGEIAGEKAGIFKNRIPAFTVPQPDEAMHVLEEKASQLNVPLQVLTPLDAKLLNGLRLGLEGEHQYLNAGLAIALCFTWLKRTGHVGDINLEQTDTLPEQFIKGLTSASLQGRAQIVPDQHIKSERSNELVFFLDGAHSPESMEVCARWFSLAIKEYNPDQTLFHQQLNNSKLPHEVVKSTHHGERGSQRNSTPILLFNCLTVRDPQLLLPQLMKTCADHGVYFKKALFVPSLSVFNKVGPQAFTPADSKVDLSWQFNLQRVWENLMQGSKGRSTDIVSEELKDDMEMSVSNCDHSAVFLSLPLAIKWLRDRVQQNQSVRFQVLVTGSLHLVGDVLNLVKK* >Glyma02g41870.2 sequence type=predicted peptide gene model=Glyma02g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDQEGGKGSPKSSSLSPYEEAMEALSSLITRRTRADDSNVGDQFSLLYDYLKMLELEEPIANMKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDIRERFRLDGMEICEEKFLAYFWWCYDRLKEKTDDNIPMPTYFRFLALLAFKIFAAEQVDVAIMEVGLGGKYDATNVVQAPIVCGITSLGYDHMEILGNTLGEIAGEKAGIFKNRIPAFTVPQPDEAMHVLEEKASQLNVPLQVLTPLDAKLLNGLRLGLEGEHQYLNAGLAIALCFTWLKRTGHVGDINLEQTDTLPEQFIKGLTSASLQGRAQIVPDQHIKSERSNELVFFLDGAHSPESMEVCARWFSLAIKEYNPDQTLFHQQLNNSKLPHEVVKSTHHGERGSQRNSTPILLFNCLTVRDPQLLLPQLMKTCADHGVYFKKALFVPSLSVFNKVGPQAFTPADSKVDLSWQFNLQRVWENLMQGSKAGRSTDIVSEELKDDMEMSVSNCDHSAVFLSLPLAIKWLRDRVQQNQSVRFQVLVTGSLHLVGDVLNLVKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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