Report for Sequence Feature Glyma02g41860
Feature Type: gene_model
Chromosome: Gm02
Start: 46943303
stop: 46947786
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g41860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G39805 AT
Annotation by Michelle Graham. TAIR10: Integral membrane Yip1 family protein | chr2:16610216-16612353 REVERSE LENGTH=275
SoyBase E_val: 3.00E-119 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3114
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12822 Panther
UNCHARACTERIZED
JGI ISS
PF04893 PFAM
Yip1 domain
JGI ISS
UniRef100_G7K200 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: YIPF1-like protein n=1 Tax=Medicago truncatula RepID=G7K200_MEDTR
SoyBase E_val: 2.00E-157 ISS
UniRef100_I1JI27 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI27_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g41860
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g41860
Paralog Evidence Comments
Glyma14g07110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g41860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g251200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g41860
Coding sequences of Glyma02g41860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g41860.1 sequence type=CDS gene model=Glyma02g41860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGAGTCTTCGTACACCGGTCTTCCCACTAGCCACTTGCTCGGTTCAGTTCCTGCTGTCATAACTGAAGAAAATAATGCCACGAAACATGTGGCCACCGGTGCAAATATGCAAACATTCCCTCCCAACAATGGAGGAGACAGAGGACCAGGACATCAAACTCTTGGCAGTCCTACTGAAGCTTTTGAACAACAGCCAGCAAACAACTGGAGGGGAATCTTTAGCATGTCATCATATTCAGAGTATTTCAATGTAGACACAGATGTTGTCTTAATCAGATTGATAAGTTCCTTGAATCCAGTTGCTGCAGACTTTTTCAGCAAGATAGATGCTAACCCTGATTTATATGGGCTTATATGGATCTCAACAACATTGGTTTTTGTGCTTGCCTCACTTGGAAATCTGGCCACGTTCCTTATGCAAAAACATGCAGATAACAGTACCTCTTGGAGCTTTGATGTCAGCTATGTGAATGTGGCTGCATGCTCTATCTATGGCTATGCAATTGTGGTTCCATTGGCATACTACTTCTTCCTTCAGTATATGGGTTCAAATGCTAGCCTTATAAGGTTTTGGTGCTTGTGGGGGTATTCCCTCACCATTTTCATCATGTCTTCTTTCCTGTTGATAATTCCTGTTGAGTTTCTTCGGTGGGTTATAATACTCCTTACGGGCGTTGCCTCGGCAAGCTTTGTTGCCTTAAACCTGAGATCTTATATAGAAGGCAATGAACTTTCAGTGGCGATTATTGCAGCATTTTTCTTGCAAATGGCTTTGGCAATCTTCATCAAGGTTTGGTTCTTTCCGTAG
Predicted protein sequences of Glyma02g41860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g41860.1 sequence type=predicted peptide gene model=Glyma02g41860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEESSYTGLPTSHLLGSVPAVITEENNATKHVATGANMQTFPPNNGGDRGPGHQTLGSPTEAFEQQPANNWRGIFSMSSYSEYFNVDTDVVLIRLISSLNPVAADFFSKIDANPDLYGLIWISTTLVFVLASLGNLATFLMQKHADNSTSWSFDVSYVNVAACSIYGYAIVVPLAYYFFLQYMGSNASLIRFWCLWGYSLTIFIMSSFLLIIPVEFLRWVIILLTGVASASFVALNLRSYIEGNELSVAIIAAFFLQMALAIFIKVWFFP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
