Glyma02g41850 - SoyBase

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Report for Sequence Feature Glyma02g41850

Feature Type:	gene_model
Chromosome:	Gm02
Start:	46933459
stop:	46940549
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g41850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55610	AT	Annotation by Michelle Graham. TAIR10: delta 1-pyrroline-5-carboxylate synthase 2 \| chr3:20624278-20628989 REVERSE LENGTH=726	SoyBase	E_val: 0	ISS
GO:0006561	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004349	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate 5-kinase activity	SoyBase	N/A	ISS
GO:0004350	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate-5-semialdehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016620	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
KOG4165	KOG	Gamma-glutamyl phosphate reductase	JGI		ISS
PTHR11063	Panther	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	JGI		ISS
PTHR11063:SF2	Panther	GLUTAMATE 5-KINASE	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
PF00696	PFAM	Amino acid kinase family	JGI		ISS
UniRef100_B0FNB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyrroline-5-carboxylate synthetase n=1 Tax=Phaseolus vulgaris RepID=B0FNB2_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336C00	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C00 related cluster n=1 Tax=unknown RepID=UPI0002336C00	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g41850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g41850

Paralog	Evidence	Comments
Glyma14g07120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g41850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g251100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g41850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g41850

Limit To All Plant Sequences

>Glyma02g41850.1   sequence type=CDS   gene model=Glyma02g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATCCTTCTCGGAGTTTCATGAAGGACGTGAAGCGCGTGATCATCAAGGTCGGCACCGCCGTGGTCACTCGCGAGGAGGGAAGGTTAGCTGTCGGAAGATTAGGCGCTCTCTGCGAGCAGATTAAGCAACTCAACTCCCTCGGATACGACATTATTCTCGTCTCCTCCGGCGCCGTCGGCATCGGCCGCCAACGACTCCGCTACCGCAAATTGATCAACAGCAGCTTCGCCGACCTCCAGAAACCCCAACACGAACTCGACGGCAAGGCCTGCGCCGCCGTCGGACAGAACAGTCTCATGGCTCTCTACGATACTCTCTTCACTCAACTCGATGTGACGTCTGCTCAGCTTCTTGTGACGGATAACGATTTTCGAGATAAGGATTTCAGGAAGCAACTTACTGAGACCGTGAAATCGTTGTTATCGCTTAAGGTTATTCCGGTGTTCAATGAGAACGATGCTGTCAGCACTAGGAAGGCTCCCTATGAGGATTCTTCTGGTATATTTTGGGATAATGATAGTTTATCTGCTCTGTTGGCCTTGGAGTTAAAAGCCGATCTTCTTGTTTTGTTGAGTGATGTAGAAGGTCTTTATAGTGGCCCTCCAAGTGATCCACATTCAAAGCTTATTCATACGTATATTAAGGAGAAGCATCAGAATGAAATTACTTTTGGTGACAAATCTAGAGTGGGAAGAGGTGGAATGACTGCCAAAGTAAAAGCTGCTGTTCATGCAGCTGATGCTGGCATTCCTGTTGTTATTACCAGTGGTTTTGCAGCTGAGAATATTATCAATGTTCTCCAAGGACAACGCATAGGAACTCTCTTCCATAAAGATGCACATGAGTGGGTCCAAGTAAAAGAGGTTGATGCTCGTGAGATGGCAGTTGCAGCCAGGGAATGTTCCAGAAGGCTCCAGGCCATATCTTCTGAAGAAAGGAATCAAATTTTACATAAAATAGCTGATGCCCTGGAAGCAAATGAAAAAATAATCAGGACTGAAAATGAAGCTGATATTGCTGTGGCACAAGAAGCAGGATATGAAAAATCCTTGGTGGCAAGGCTAGCTATAAAACCTGGGAAGATTGCAAGCCTTGCAAACAACATGCGAATTATTGCCAACATGGAAGATCCAATTGGTCAAGTATTAAAAAGAACTGAGCTATCAGATGGGCTAATTTTAGAGAAGACATCATCTCCTTTGGGAGTGCTCCTTATTGTTTTTGAGTCACGCCCTGATGCTCTTGTACAGATAGCTTCACTGGCAATCCGAAGTGGGAATGGACTTCTCTTGAAAGGTGGCAAAGAAGCTAGGCGGTCAAATGCAATTTTGCACAAAGTAATTACTGAGGCCATACCAGATACTGTTGGTGGAAAACTTATAGGACTTGTGACCTCAAGGGAAGAAATCCCTGAGCTACTTAAGCTGGATGATGTAATCGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAGATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCATGCTGATGGAGTTTGTCATGTCTATGTTGATAAGTCTGCTAATGTGGAGATGGCAAGGCGGATTGTACTTGATGCAAAAATAGATTATCCAGCAGCCTGCAACGCCATGGAAACACTTCTTGTCCACAAGGATTTGATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAGGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCACAAGCACAAACATTTCATCATGAGTACAGTTCGCTGGCTTGCACTGTTGAAATTGTGGATGACGTGTATGCAGCTATTGATCATATAAATCTTTATGGAAGTGCACATACTGACTCCATCGTTGCAGAAGATAAAGAAGTTGCTAATGTGTTTCTACGCCAAGTAGACAGTGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGGGATTGTTAACAACAAGATGGATACTAAAAGGAAGTGGACAAGTAGTGGATGGTGATAAAGGGATTGTCTATACCCACAAAGACATTGCAACTTAA

Predicted protein sequences of Glyma02g41850

Limit To All Plant Sequences

>Glyma02g41850.1   sequence type=predicted peptide   gene model=Glyma02g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPSRSFMKDVKRVIIKVGTAVVTREEGRLAVGRLGALCEQIKQLNSLGYDIILVSSGAVGIGRQRLRYRKLINSSFADLQKPQHELDGKACAAVGQNSLMALYDTLFTQLDVTSAQLLVTDNDFRDKDFRKQLTETVKSLLSLKVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLVLLSDVEGLYSGPPSDPHSKLIHTYIKEKHQNEITFGDKSRVGRGGMTAKVKAAVHAADAGIPVVITSGFAAENIINVLQGQRIGTLFHKDAHEWVQVKEVDAREMAVAARECSRRLQAISSEERNQILHKIADALEANEKIIRTENEADIAVAQEAGYEKSLVARLAIKPGKIASLANNMRIIANMEDPIGQVLKRTELSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEARRSNAILHKVITEAIPDTVGGKLIGLVTSREEIPELLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVLGHADGVCHVYVDKSANVEMARRIVLDAKIDYPAACNAMETLLVHKDLIEKGWLNDIVVDLRTEGVKLYGGPRASSLLNIPQAQTFHHEYSSLACTVEIVDDVYAAIDHINLYGSAHTDSIVAEDKEVANVFLRQVDSAAVFHNASTRFSDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVDGDKGIVYTHKDIAT*

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