Glyma02g41830 - SoyBase

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Report for Sequence Feature Glyma02g41830

Feature Type:	gene_model
Chromosome:	Gm02
Start:	46927339
stop:	46931711
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g41830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56740	AT	Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the GNAT family 2 \| chr5:22953009-22955577 REVERSE LENGTH=467	SoyBase	E_val: 0	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006348	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing at telomere	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0016573	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone acetylation	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004402	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity	SoyBase	N/A	ISS
GO:0008080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity	SoyBase	N/A	ISS
GO:0010485	GO-mf	Annotation by Michelle Graham. GO Molecular Function: H4 histone acetyltransferase activity	SoyBase	N/A	ISS
KOG2696	KOG	Histone acetyltransferase type b catalytic subunit	JGI		ISS
PTHR12046	Panther	HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT	JGI		ISS
PF01853	PFAM	MOZ/SAS family	JGI		ISS
PF10394	PFAM	Histone acetyl transferase HAT1 N-terminus	JGI		ISS
UniRef100_G7KGV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase type B catalytic subunit n=1 Tax=Medicago truncatula RepID=G7KGV7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JI23	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI23_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g41830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g41830

Paralog	Evidence	Comments
Glyma14g07140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g41830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g250900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g41830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g41830

Limit To All Plant Sequences

>Glyma02g41830.2   sequence type=transcript   gene model=Glyma02g41830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAGGGGTACCGGGAATTTGCCCTATTTAAAACCCCTCTATTCTCCGCGTAATTTGATTTCCCGCTCTGAAAACCCTAACTACCACTGAGACTGAGTTGAGCGGAGAAGAGAAGGAAGAGCGAATGGGGCAGAAGCAGCGTTCAAGTTCCGAAGCCGACAACGAAGTCAAGAAACGACGCCGTGTTGGTTTCTCAGGCGTTGATTCTGGAGTTGAGGCCAAAGACTGCATCACAATCTATCTAGTTTCAAGCAAGGAGGAATTCGATGCTCCAGAGAGTTTTGTCATTCATCCTGTGGATCTGAATAGCTTTTTTGATGATGATGGGAAAATTTATGGTTATGAGGGTTTGAAGATTACCATCTGGATTAGCAGCATATCATTTTATGCGTATGCTGATATTACATTCCAGAGTTCATCTGATCGAGGCAAAGGGGTCACAGATCTGAAATCTGCTCTTCAGACAATTTTCGCTGAGACTCTTGTTGATAGCAAGGATGAATTCCTTCAGAAATATTTGGCAGATAATGACTTTGTCAGAACAAACATCTCAAATGGAGAAACTTTGAAGCACAAAGCTTTTAAGGAGAACATTTGTGATTCTAACCAGCTTACAGATTCTTCTACTTCTACTGTTGAGGTTGTTGTCCGTTTGGTGGCTGGCAACATGGCTACTGGACAACTTTACAGTCATCTAATACCCCTCACACTACTTCTTGTTGATGGTAGCAGTCCAATTGATGTTACCGATTCACAGTGGGAGCTGTATATTGTGTGTCAGAAGAAAACTGATCAGCAGGGAGAGATCCAATATAGGTTGACTGGTTTTACTGCTGTTTATCGATTTTATCACTATCCTGATGATTCCCGATTGCGACTAAGCCAGATACTGGTATTACCTCCTTACCAGCACAAGGGTTATGGTCGATTCCTTCTAGAGGTGCTATACGATGTTGCTATATCTGAAAATGTTTTTGACTTCACAGTAGAAGAGCCATTAGATCACTTCCAACGTGTCCGCACATGTGTTGACGCACTTCGCCTGCTTCGTTTTGGCCCAATTCAGAATATAGTTACTAAAGCCGTTTCACTTCTGAAGCAAGAAAAGTTATCAAAGAAAGCACATTGTCCTCGACTTTTACCACCTCCCAGTGCTATTGAGGATGTAAGGAAAAGTCTGAAAATTAATAAGCAACAGTTTCTCCAGTGTTGGGAGGTTTTGATCTACATTGGCCTTAATCCTGTTGACAAGAACATGGAGAACTTTGTTAGTATTATTTTGAACCGTGTTAAGTATGATATCTTAGGGAAAGATTCTGGGACGTCTGGGAAGCAACTTATTGAAGTACCAAGTGATGTTGACCAGGAGATGTCATTTGTCATGTTCAGATCAGAAGCTAACGAAGCTAGTACTGTGCAAATGGATGACAATCAGGCTAATCAAGAAGAGCAACTCCAGAAGTTAGTTCAGGAAAGGGTGAAAGAAATTCAGTTGATTGCGGAAAAGGTAACCCTGCATCTTGGGAGCTCAGGGTTGGTGGTTAATTAGATTTGTCCTTCCCAAGATGGCATGGGATGAAAAGGTCATGCATCTATGATATTGTGTGATTTTTTTCCTGTGGACCAATTAGAGTTTGTTTTTCTGGACAATCACTCAGTAGTGTATTTGGGTTCTTCCTTCTAGGATGTTTTAAGATTCTCTTATAGTAGTCTGTGAAGGAACCAGTGATCTGTTAAGCTGTAATTACTGAGATTAACCACAACAAAGTTGATTGAGTGACATTCAGTGGTTATTGTCCATTCTAATACGTCTTGCTCGTACCTTTTCTTTTACTTCCGTGCACTAGTATGATGCATCCAAGAAATGTGGGTTCCGGTTTCACAGTCCTTCCTCTTGAGTTTTATTCTTAAGTGAGTACCCAACCTGGAACGTTGAATATCATTTAGCTTCAATGTCATTTTAGAATGTTTACCCCAACTTTTTATTATTTTAAGATATTTTGATTGTATACTGTTGGGTATAATATAAATTGGTCTAAATATACATCCAAG

Coding sequences of Glyma02g41830

Limit To All Plant Sequences

>Glyma02g41830.1   sequence type=CDS   gene model=Glyma02g41830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGAAGCAGCGTTCAAGTTCCGAAGCCGACAACGAAGTCAAGAAACGACGCCGTGTTGGTTTCTCAGGCGTTGATTCTGGAGTTGAGGCCAAAGACTGCATCACAATCTATCTAGTTTCAAGCAAGGAGGAATTCGATGCTCCAGAGAGTTTTGTCATTCATCCTGTGGATCTGAATAGCTTTTTTGATGATGATGGGAAAATTTATGGTTATGAGGGTTTGAAGATTACCATCTGGATTAGCAGCATATCATTTTATGCGTATGCTGATATTACATTCCAGAGTTCATCTGATCGAGGCAAAGGGGTCACAGATCTGAAATCTGCTCTTCAGACAATTTTCGCTGAGACTCTTGTTGATAGCAAGGATGAATTCCTTCAGAAATATTTGGCAGATAATGACTTTGTCAGAACAAACATCTCAAATGGAGAAACTTTGAAGCACAAAGCTTTTAAGGAGAACATTTGTGATTCTAACCAGCTTACAGATTCTTCTACTTCTACTGTTGAGGTTGTCCGTTTGGTGGCTGGCAACATGGCTACTGGACAACTTTACAGTCATCTAATACCCCTCACACTACTTCTTGTTGATGGTAGCAGTCCAATTGATGTTACCGATTCACAGTGGGAGCTGTATATTGTGTGTCAGAAGAAAACTGATCAGCAGGGAGAGATCCAATATAGGTTGACTGGTTTTACTGCTGTTTATCGATTTTATCACTATCCTGATGATTCCCGATTGCGACTAAGCCAGATACTGGTATTACCTCCTTACCAGCACAAGGGTTATGGTCGATTCCTTCTAGAGGTGCTATACGATGTTGCTATATCTGAAAATGTTTTTGACTTCACAGTAGAAGAGCCATTAGATCACTTCCAACGTGTCCGCACATGTGTTGACGCACTTCGCCTGCTTCGTTTTGGCCCAATTCAGAATATAGTTACTAAAGCCGTTTCACTTCTGAAGCAAGAAAAGTTATCAAAGAAAGCACATTGTCCTCGACTTTTACCACCTCCCAGTGCTATTGAGGATGTAAGGAAAAGTCTGAAAATTAATAAGCAACAGTTTCTCCAGTGTTGGGAGGTTTTGATCTACATTGGCCTTAATCCTGTTGACAAGAACATGGAGAACTTTGTTAGTATTATTTTGAACCGTGTTAAGTATGATATCTTAGGGAAAGATTCTGGGACGTCTGGGAAGCAACTTATTGAAGTACCAAGTGATGTTGACCAGGAGATGTCATTTGTCATGTTCAGATCAGAAGCTAACGAAGCTAGTACTGTGCAAATGGATGACAATCAGGCTAATCAAGAAGAGCAACTCCAGAAGTTAGTTCAGGAAAGGGTGAAAGAAATTCAGTTGATTGCGGAAAAGGTAACCCTGCATCTTGGGAGCTCAGGGTTGGTGGTTAATTAG

>Glyma02g41830.2   sequence type=CDS   gene model=Glyma02g41830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCAGAAGCAGCGTTCAAGTTCCGAAGCCGACAACGAAGTCAAGAAACGACGCCGTGTTGGTTTCTCAGGCGTTGATTCTGGAGTTGAGGCCAAAGACTGCATCACAATCTATCTAGTTTCAAGCAAGGAGGAATTCGATGCTCCAGAGAGTTTTGTCATTCATCCTGTGGATCTGAATAGCTTTTTTGATGATGATGGGAAAATTTATGGTTATGAGGGTTTGAAGATTACCATCTGGATTAGCAGCATATCATTTTATGCGTATGCTGATATTACATTCCAGAGTTCATCTGATCGAGGCAAAGGGGTCACAGATCTGAAATCTGCTCTTCAGACAATTTTCGCTGAGACTCTTGTTGATAGCAAGGATGAATTCCTTCAGAAATATTTGGCAGATAATGACTTTGTCAGAACAAACATCTCAAATGGAGAAACTTTGAAGCACAAAGCTTTTAAGGAGAACATTTGTGATTCTAACCAGCTTACAGATTCTTCTACTTCTACTGTTGAGGTTGTTGTCCGTTTGGTGGCTGGCAACATGGCTACTGGACAACTTTACAGTCATCTAATACCCCTCACACTACTTCTTGTTGATGGTAGCAGTCCAATTGATGTTACCGATTCACAGTGGGAGCTGTATATTGTGTGTCAGAAGAAAACTGATCAGCAGGGAGAGATCCAATATAGGTTGACTGGTTTTACTGCTGTTTATCGATTTTATCACTATCCTGATGATTCCCGATTGCGACTAAGCCAGATACTGGTATTACCTCCTTACCAGCACAAGGGTTATGGTCGATTCCTTCTAGAGGTGCTATACGATGTTGCTATATCTGAAAATGTTTTTGACTTCACAGTAGAAGAGCCATTAGATCACTTCCAACGTGTCCGCACATGTGTTGACGCACTTCGCCTGCTTCGTTTTGGCCCAATTCAGAATATAGTTACTAAAGCCGTTTCACTTCTGAAGCAAGAAAAGTTATCAAAGAAAGCACATTGTCCTCGACTTTTACCACCTCCCAGTGCTATTGAGGATGTAAGGAAAAGTCTGAAAATTAATAAGCAACAGTTTCTCCAGTGTTGGGAGGTTTTGATCTACATTGGCCTTAATCCTGTTGACAAGAACATGGAGAACTTTGTTAGTATTATTTTGAACCGTGTTAAGTATGATATCTTAGGGAAAGATTCTGGGACGTCTGGGAAGCAACTTATTGAAGTACCAAGTGATGTTGACCAGGAGATGTCATTTGTCATGTTCAGATCAGAAGCTAACGAAGCTAGTACTGTGCAAATGGATGACAATCAGGCTAATCAAGAAGAGCAACTCCAGAAGTTAGTTCAGGAAAGGGTGAAAGAAATTCAGTTGATTGCGGAAAAGGTAACCCTGCATCTTGGGAGCTCAGGGTTGGTGGTTAATTAG

Predicted protein sequences of Glyma02g41830

Limit To All Plant Sequences

>Glyma02g41830.1   sequence type=predicted peptide   gene model=Glyma02g41830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKQRSSSEADNEVKKRRRVGFSGVDSGVEAKDCITIYLVSSKEEFDAPESFVIHPVDLNSFFDDDGKIYGYEGLKITIWISSISFYAYADITFQSSSDRGKGVTDLKSALQTIFAETLVDSKDEFLQKYLADNDFVRTNISNGETLKHKAFKENICDSNQLTDSSTSTVEVVRLVAGNMATGQLYSHLIPLTLLLVDGSSPIDVTDSQWELYIVCQKKTDQQGEIQYRLTGFTAVYRFYHYPDDSRLRLSQILVLPPYQHKGYGRFLLEVLYDVAISENVFDFTVEEPLDHFQRVRTCVDALRLLRFGPIQNIVTKAVSLLKQEKLSKKAHCPRLLPPPSAIEDVRKSLKINKQQFLQCWEVLIYIGLNPVDKNMENFVSIILNRVKYDILGKDSGTSGKQLIEVPSDVDQEMSFVMFRSEANEASTVQMDDNQANQEEQLQKLVQERVKEIQLIAEKVTLHLGSSGLVVN*

>Glyma02g41830.2   sequence type=predicted peptide   gene model=Glyma02g41830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQKQRSSSEADNEVKKRRRVGFSGVDSGVEAKDCITIYLVSSKEEFDAPESFVIHPVDLNSFFDDDGKIYGYEGLKITIWISSISFYAYADITFQSSSDRGKGVTDLKSALQTIFAETLVDSKDEFLQKYLADNDFVRTNISNGETLKHKAFKENICDSNQLTDSSTSTVEVVVRLVAGNMATGQLYSHLIPLTLLLVDGSSPIDVTDSQWELYIVCQKKTDQQGEIQYRLTGFTAVYRFYHYPDDSRLRLSQILVLPPYQHKGYGRFLLEVLYDVAISENVFDFTVEEPLDHFQRVRTCVDALRLLRFGPIQNIVTKAVSLLKQEKLSKKAHCPRLLPPPSAIEDVRKSLKINKQQFLQCWEVLIYIGLNPVDKNMENFVSIILNRVKYDILGKDSGTSGKQLIEVPSDVDQEMSFVMFRSEANEASTVQMDDNQANQEEQLQKLVQERVKEIQLIAEKVTLHLGSSGLVVN*

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