Glyma02g41810 - SoyBase

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Report for Sequence Feature Glyma02g41810

Feature Type:	gene_model
Chromosome:	Gm02
Start:	46911509
stop:	46916960
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g41810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55580	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein \| chr3:20612766-20615730 FORWARD LENGTH=488	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF22	Panther	REGULATOR OF CHROMOSOME CONDENSATION-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
UniRef100_B9SE02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase Nek8, putative n=1 Tax=Ricinus communis RepID=B9SE02_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JI21	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JI21_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g41810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g41810

Paralog	Evidence	Comments
Glyma14g07160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g41810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g250700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g41810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g41810

Limit To All Plant Sequences

>Glyma02g41810.2   sequence type=CDS   gene model=Glyma02g41810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAAAGGACGCCGCTCTTGACGCCGGTTGCCGTTAGGGTTCCGCCGTGTGATTATTCTTGGAATGATGTTTGCGGCGGTGGCTGTGGATTCGCTATTGCTATATCAGAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAACCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGCATTCCCTCTGGGAAGGTATTTGGTGAATCATCAACAGGGGTAAGTCTTGAAAAAGATGTGCCAGGAAGGCATACTCCATTGTTCACAGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAGTAACAGTGGAGAAGAAAGTACAAAGCGAAGGAGAGTGTCTTCAGCAAAGCAAACAGCTGAAAGCTCGTCATCCAGTGATGATAGTCTGACAGCATTCCCATGTCTTGTCACACTAAATCCAGGGATAAGGATAGCTAGTGTTGCAGCTGGTGGACGTCATACACTAGCATTGTCAGATACAGGACTGGTGTGGGCTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTCTGGGTTCCAGAATACGTATGGTTTCCACTCCTCATCTTGTTCCTTGCATTGATTCCTCTTATTATGTTAAAGATAGATCTGCTACACTGGCTCGAGGAAACATGGGTTCAGAGGGACAGACTTTTAGAATTCCTGGAAGTTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAATTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCCTATTGGGTATCCACATAGAGGGAATTGCTGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGGAATCAGTTTGGGCAGTTGGGAACTGGTGCTGATCAAGCCGAGACTCTACCAAGACTAGTGGATTCACCGAGTTTGAAAAATTTGCATGCTAAGAATATATCTTGCGGTGCTCGCCACACTGCTTTAGTAACAGCTGGGCCTTGGGGACGTGATTGA

Predicted protein sequences of Glyma02g41810

Limit To All Plant Sequences

>Glyma02g41810.2   sequence type=predicted peptide   gene model=Glyma02g41810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWGYLPGALPQRTPLLTPVAVRVPPCDYSWNDVCGGGCGFAIAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTETSIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGKVFGESSTGVSLEKDVPGRHTPLFTEQVSPRSQGSRSTGGTASSNSGEESTKRRRVSSAKQTAESSSSSDDSLTAFPCLVTLNPGIRIASVAAGGRHTLALSDTGLVWAWGYGGEGQLGLGSRIRMVSTPHLVPCIDSSYYVKDRSATLARGNMGSEGQTFRIPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGITDDELSPTCVSSLLGIHIEGIAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETLPRLVDSPSLKNLHAKNISCGARHTALVTAGPWGRD*

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