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Report for Sequence Feature Glyma02g41720

Feature Type:gene_model
Chromosome:Gm02
Start:46807912
stop:46810490
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g41720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14465AT Annotation by Michelle Graham. TAIR10: AT-hook motif nuclear-localized protein 20 | chr4:8320972-8321817 FORWARD LENGTH=281 SoyBaseE_val: 2.00E-68ISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03479PFAM Domain of unknown function (DUF296) JGI ISS
UniRef100_B9STJ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO SoyBaseE_val: 7.00E-71ISS
UniRef100_I1JI12UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JI12_SOYBN SoyBaseE_val: 9.00E-148ISS

Expression Patterns of Glyma02g41720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g41720
ParalogEvidenceComments
Glyma14g07250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g41720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g249800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g41720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g41720
>Glyma02g41720.1   sequence type=CDS   gene model=Glyma02g41720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATCGTTGGTGGGCAGGTAACGTGCCGGTGAGGCCCAATGAACAAGACGACGGTGACAACAACCCTACTCCGACCAACAGTGGGAACAGTAACACCAACGTTAACGCGGTTACTGAGGACGATGCCAACACAAACGACGGCGAGGATCAGAATCTAAGTGCCGGGCGGCGGCCGCGTGGCAGGCCACCCGGGTCGAGAAACAAGCCGAAGCCACCAGTGGTGGTAACCAAGGAGAGTCCCAACGCGCTCCACAGCCACATCCTCGAAATCAGCGGTGGCAGCGACGTGGCGGAGTGCATTGCCACCTTCGCCACGCGCCGCCACCGCGGTGTCTCGGTCCTCAGCGGCAGTGGCGTAGTTACCAACGTCACGCTCCGGCAGCCGGCAGCCCCGGGAGGAGTCATCACCCTCCAGGGGAGGTTTGAGATTCTCTCCCTCTCCGGTGCGTTTCTGCCGGCGCCGTCGCCGCCGGAAGCCACCGGACTCACCGTGTACCTCGCCGGGGGGGAGGGACAGGTAGTCGGTGGAAGCGTGGTGGGGCCCCTTGTCGCCTCGGGGCCCGTGATGGTTGTTGCTGCTACTTTCGCTAATGCCACCTATGAAAGGTTGCCTTTGGAGGATGAACAAGGTGAAGAGGACATGCCAGATGTGAATGAAGATAATTATGGAACTGGGGAGTTTTAA
Predicted protein sequences of Glyma02g41720
>Glyma02g41720.1   sequence type=predicted peptide   gene model=Glyma02g41720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANRWWAGNVPVRPNEQDDGDNNPTPTNSGNSNTNVNAVTEDDANTNDGEDQNLSAGRRPRGRPPGSRNKPKPPVVVTKESPNALHSHILEISGGSDVAECIATFATRRHRGVSVLSGSGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGEGQVVGGSVVGPLVASGPVMVVAATFANATYERLPLEDEQGEEDMPDVNEDNYGTGEF*






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