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Report for Sequence Feature Glyma02g41540

Feature Type:gene_model
Chromosome:Gm02
Start:46630267
stop:46633212
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g41540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55470AT Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:20564356-20566092 FORWARD LENGTH=155 SoyBaseE_val: 8.00E-43ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009963GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1030 KOG Predicted Ca2+-dependent phospholipid-binding protein JGI ISS
PTHR10774Panther CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED) JGI ISS
PTHR10774:SF1Panther CALCIUM LIPID BINDING PROTEIN JGI ISS
PF00168PFAM C2 domain JGI ISS
UniRef100_G7KBR3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Elicitor-responsive protein n=1 Tax=Medicago truncatula RepID=G7KBR3_MEDTR SoyBaseE_val: 2.00E-60ISS
UniRef100_I1JHZ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHZ5_SOYBN SoyBaseE_val: 2.00E-107ISS

Expression Patterns of Glyma02g41540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g41540 not represented in the dataset
Glyma02g41540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g41540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g248100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g41540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g41540
>Glyma02g41540.1   sequence type=CDS   gene model=Glyma02g41540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTGGTTTCATGGAGGTGCAGCTTGTCAAAGCAAAAGGCCTGCATAACGCTGATATCTTTGGTGAAATGGACCCATATGTTCTGATACAGTACAATGACCAAGAGCAGAGGAGTAGTGTCGCTATTGGTCAGGGCACAAACCCAGTATGGAATGAGAAATTTATGTTCAAAGTTGAATACCTTGGATCAGGTGATAAACACAAGCTCATCTTCAAAATTATGGACCAAGACCTATATACGGATGAGTTCGTTGGACAAGCCACAATCCATGTCAAGGATTTATTGGCCCAAGGTATAGAGAATGGAGGAGCTAAGCTACAAACTCTCAAGTATAGAGTGGTTCGTGCTAACAATTCTTACTGTGGCGAAATTGATGTTGGTGTTACTTTCACCCCACAGGTGGAAGAAGAAATTGTAAAAGAAGATATAGGAGGAAGGAAAGAAAGAAAGTGA
Predicted protein sequences of Glyma02g41540
>Glyma02g41540.1   sequence type=predicted peptide   gene model=Glyma02g41540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIGFMEVQLVKAKGLHNADIFGEMDPYVLIQYNDQEQRSSVAIGQGTNPVWNEKFMFKVEYLGSGDKHKLIFKIMDQDLYTDEFVGQATIHVKDLLAQGIENGGAKLQTLKYRVVRANNSYCGEIDVGVTFTPQVEEEIVKEDIGGRKERK*






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