Glyma02g41040 - SoyBase

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Report for Sequence Feature Glyma02g41040

Feature Type:	gene_model
Chromosome:	Gm02
Start:	46213331
stop:	46222911
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g41040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02850	AT	Annotation by Michelle Graham. TAIR10: STELAR K+ outward rectifier \| chr3:619701-623473 REVERSE LENGTH=828	SoyBase	E_val: 0	ISS
GO:0006811	GO-bp	Annotation by Michelle Graham. GO Biological Process: ion transport	SoyBase	N/A	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005249	GO-mf	Annotation by Michelle Graham. GO Molecular Function: voltage-gated potassium channel activity	SoyBase	N/A	ISS
GO:0015271	GO-mf	Annotation by Michelle Graham. GO Molecular Function: outward rectifier potassium channel activity	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF6	Panther	EAG-RELATED VOLTAGE-GATED POTASSIUM CHANNEL	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
PF00520	PFAM	Ion transport protein	JGI		ISS
PF11834	PFAM	Domain of unknown function (DUF3354)	JGI		ISS
UniRef100_G7KG18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel SKOR n=1 Tax=Medicago truncatula RepID=G7KG18_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MBT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBT8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g41040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g41040

Paralog	Evidence	Comments
Glyma14g39330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g41040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g243400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g41040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g41040

Limit To All Plant Sequences

>Glyma02g41040.2   sequence type=CDS   gene model=Glyma02g41040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGGGAAGAAGAATGTGAAGGCGATGACCACGGCGGAAGAGGAAGATGATCAGGGGAAGCACACGACGTCGTCTTCGTTTTCGTCTTCTTCTTCGCCGTCGTCGTCTTCGGACGAGAGAGAGTACGAGGTGCAGGACCTGCGTGACCGGTTGAAATCGTCGCAAGGGAGCATGTTCAATCTGATAGAGAACCAGTTGGGACTCAACTCGACTTGGAGCAAGTTCAGTCGCCAAGCTCTTCTCCATGGAATCCGAGGCTTCTCCATGGACTTAGTTAAAGACTTCGTTATTCATCCTGATAACAGGTGGTATCGGGCATGGACAAATTTCATATTGGTATGGGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGGTTTTTCCGTGGCTTGCCTGAGAATCTCTTTATACTGGACATCATTGGACAAATAGCTTTTCTTGTAGATATTGTCTTGCAATTCTTTGTTGCTTATAGAGACAGTCAGACCTATCGTATGGTCTACAAGAGAACCCCTATTGCTCTGCGGTATCTGAAATCTAACTTCATATTTGATCTTCTTGGATGTATGCCCTGGGACATCATCTACAAGGCTTGTGGAAGAAAAGAGGAAGTGAGGTACCTTTTGTGGATCAGATTATATAGGGTGCGGAAAGTCGAAGACTTTTTCCACAAGTTGGAGAAGGACATACGTGTCAATTACATTATTACCCGGATTGTGAAACTGATAGTAGTTGAACTCTACTGCACCCATACAGCAGCCTGCATTTTCTACTATTTAGCTACTACACTACCTGAATCCCAAGAAGGGTACACATGGATAGGAAGTTTAAAACTAGGTGACTTTAGTTATTCACATTTCAGAGAAATTGATCTTTGGAAGCGCTATACAACATCTCTGTACTTCGCTATTGTTACAATGGCTACAGTTGGCTATGGAGATATGCATGCAGTAAATATGAGGGAGATGATATTCATAATGGTATATGTTTCATTTGATATGATTCTTGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAAGATGACAGACCTTATGAAATATATGAACAGAAATAGGCTCGGAAGGGATATCCGTGAACAAATAAAAGGTCATGTGCGGTTACAGTATGAGAGTAGCTACACTGAGGCTTCTGTCATTCAGGATATCCCTATTTCTATTCGAGCTAAGATATCCCAAACATTATATTTGCCGTACATTGAAAAGGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTATTAGGCTCCATGAGGAGTTCTTTCTTCCAGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTATGTCATGGAGTACTGGAGGAAGTAGGCATAGCTGAAGATGGGACTGAAGAAACTGTTTCACTTCTGCAGCCTAACAGTTCATTCGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGTGTTTGTGAACTGGGTAGACTCCTGCGACTTGATAAACAATCATTTACAAATATCCTAGACATATACTTTTATGATGGAAGGAAAGTGTTATACAACCTTCTAGAGGGAAAAGAGTCTTTTCGAGATAAGCAGTTGGAGTCAGACATCACATTTCATCTTGGAAAGCAAGAAGCTGAGCTTGCTTTGAAGGTCAATAGTGCAGCTTTCAATGGGGATATGTATCAGCTAAAAGGTTTAATTCGAGCAGGAGCTGATCCCAACAAGGCAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGATATCACAATTTTCCTTATTCAAGAACGTGTAGATGTCAATATTATAGATAACTTCGGGAACACACCCTTACTTGAAGCAGTTAAGAATGGACATGATCGGGTTGCTTCTTTACTTGTTAAAGAAGGGGCCTCTATGAAGATCGAAAATGCTGGTAGTTTTTTGTGTACTGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAGGATTATGATTACCGAAGTCCTCTTCACGTTGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCCGGAGCTAGTGTTTTTACACGAGACAGATGGGGAAATACCCCGCTTGATGAAGCTCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGATGCAAAATCTTCTCAACTGTCAGAATTTCCATCCCAAGAATTTACAGATAAAATGCATCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGACATGGAATTGTATTATGGATTCCACACTCTATCGAAGAGCTAATCAAATCAGCAGCAGAACAAATAGAAATTTCTGGCGGTTCTTGTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATCAAGGATGGTCAGAAGCTGTATTTAGTCCATGAAACACATTAG

Predicted protein sequences of Glyma02g41040

Limit To All Plant Sequences

>Glyma02g41040.2   sequence type=predicted peptide   gene model=Glyma02g41040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGKKNVKAMTTAEEEDDQGKHTTSSSFSSSSSPSSSSDEREYEVQDLRDRLKSSQGSMFNLIENQLGLNSTWSKFSRQALLHGIRGFSMDLVKDFVIHPDNRWYRAWTNFILVWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSNFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRVRKVEDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDMHAVNMREMIFIMVYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEASVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELGRLLRLDKQSFTNILDIYFYDGRKVLYNLLEGKESFRDKQLESDITFHLGKQEAELALKVNSAAFNGDMYQLKGLIRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQERVDVNIIDNFGNTPLLEAVKNGHDRVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLHVAAAEGLYFMAKLLLEAGASVFTRDRWGNTPLDEARMCGNKNLIKLLEDAKSSQLSEFPSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWIPHSIEELIKSAAEQIEISGGSCILSEDAGKITDVDMIKDGQKLYLVHETH*

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