Glyma02g40990 - SoyBase

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Report for Sequence Feature Glyma02g40990

Feature Type:	gene_model
Chromosome:	Gm02
Start:	46197319
stop:	46198635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g40990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66160	AT	Annotation by Michelle Graham. TAIR10: CYS, MET, PRO, and GLY protein 1 \| chr1:24637218-24638513 FORWARD LENGTH=431	SoyBase	E_val: 3.00E-120	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR22849	Panther	WDSAM1 PROTEIN	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
UniRef100_G7KFZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=2 Tax=Medicago truncatula RepID=G7KFZ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JHU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHU5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g40990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g40990

Paralog	Evidence	Comments
Glyma14g39300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g40990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g242900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g40990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g40990

Limit To All Plant Sequences

>Glyma02g40990.1   sequence type=CDS   gene model=Glyma02g40990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTGTCATGGACAAAAGGGAGAGTGTTCCGGCGTGCCAGAAAGGGGAAAGAGTTGAAAAATTTCGGTGGCGACTTGGAGATAGACATTGCGATCCCCACCCACTTCCGGTGCCCGGTAACATTGGACATGATGAAGGACCCCGTGACCGTTTCCACGGGCATAACCTACGACCGCGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTCACCAAAACGGAGTTGACAACCTTCGACATGATCCCGAACCACGCCATCCGTAGGATGATCCAGGACTGGTGCGTGGAGCACCGTTCCCACGGCATCGAACGGATCCCCACTCCTCGTATCCCCGTCACCCCGTACGAGGTTGCTGACACGTGTACGAGGATCTTGTCGGCGGCGCAACACGGGGACGAGAACAAGTGCGTGGAGTTGGTGAGCAAAATTAAAGCGTGGGGAAGGGAAAGTGAGAGAAATAAGAGATGCATAGTTTCTAACGGTGCTGCTTTAGCACTAGCGAACGCTTTCAACTCTTTCTCATCGCGTGGGTTGTTAATTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGTGCTTTGGTATGGATGCGTCCTCTTTCTGAAGAGGGTAGATCCGTGTTGGGGTCATCGAGTTCTATCTCTTGCATGGTTTGGTTCATGAACGGTAAACAATTATCCACAAGGCAAAACGCTGCTTTGGTTCTTAAGGAGATGCATGTTGAGGCTTTGGTGAAATGTGTAGGAGTTTTTGAGGCTTTGATTAACATGATTAAGGAGCCTGTTGGGAGTGGTTCCACCAAGGCCTGTTTGTCAACGATTTTCAACTTGGTTAATAATAAAAGAGGCGTGACGACTTGTCAAAGGTTTGTGGAATTGGGTTTGGTTGATGTGGTGTTGGAGGTTCTTGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATAGCGTTTGTGATTGCAAGCAAGGGGTGGAGATGGCAAAGGCTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTCTTGAGGGTGTCTGAGTTGTGTTCAAGCTTCGCGGTTTCGGTTCTTTGGAAGCTTTGTGACAAGAATATTGAAGAAGGGGTGTTGATTGAGGCGCTTCAAATGGGGGTGTTTCATAAACTACTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGAACCAAAGAGAAGGCTACGGAGTTGTTGAAGTTGTTGAATAGTTGCAGGAGCAAAGCTGAGTGTGTTCATCATTCTTCGTTGGATTTCAAGCATTTGAAGAATCCCTTCTAA

Predicted protein sequences of Glyma02g40990

Limit To All Plant Sequences

>Glyma02g40990.1   sequence type=predicted peptide   gene model=Glyma02g40990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSWTKGRVFRRARKGKELKNFGGDLEIDIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTTFDMIPNHAIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVADTCTRILSAAQHGDENKCVELVSKIKAWGRESERNKRCIVSNGAALALANAFNSFSSRGLLIEKNVVVLDEILGALVWMRPLSEEGRSVLGSSSSISCMVWFMNGKQLSTRQNAALVLKEMHVEALVKCVGVFEALINMIKEPVGSGSTKACLSTIFNLVNNKRGVTTCQRFVELGLVDVVLEVLVDAERGVCEKALGVLDSVCDCKQGVEMAKANALTLPLVIKKLLRVSELCSSFAVSVLWKLCDKNIEEGVLIEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNSCRSKAECVHHSSLDFKHLKNPF*

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