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Report for Sequence Feature Glyma02g40981

Feature Type:gene_model
Chromosome:Gm02
Start:46187091
stop:46191326
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g40981
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66150AT Annotation by Michelle Graham. TAIR10: transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942 SoyBaseE_val: 1.00E-164ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004675GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF467Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_C6ZRR4UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAK-type protein kinase n=1 Tax=Glycine max RepID=C6ZRR4_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JHU4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHU4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g40981
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g40981 not represented in the dataset
Glyma02g40981 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g40981 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g242800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g40981
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g40981
>Glyma02g40981.1   sequence type=CDS   gene model=Glyma02g40981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCAGGGAACGTTGAGTAGCCATCTTTTTAATTGGCCAGAGGAAGGACTAGAACCACTGGAGTGGAATAGAAGATTGACAATTGCCTTGGATGTGGCAAGGGGTGTTGAGTACCTGCATAGCTTGGCCCATCAAAGCTTCATACATAGGGATTTAAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTCCGTCTTGCTCCAGAAGGAAAAGCCTCTATAGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCGCCAGAGTATGCAGTTACTGGCCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAGCTCATGACAGGAAGGAAAGCACTTGATGAGACTCAACCCGAGGATAGCATGCACCTTGTAACATGGTTCCGCAAAATGTCCATAAATAAGGACTCATTCCGCAAGGCCATAGACTCCGCCATGGAGCTCAATGAGGAAACGCTTGCTAGCATTCACACAGTAGCAGAGTTAGCCGGCCACTGCTGTGCGAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCTGTCAACGTGCTTTCTTCTCTTGTGGAACTCTGGAAACCATCTGATCAGAATTCTGAAGATATATATGGCATTGACCTTGACATGTCCCTACCACAAGCACTAAAGAAGTGGCAAGCTTACGAAGGTAGAAGCCAAATGGAGTCATCTTCTTCGTCTTCGCTACTTCCAAGCTTGGATAACACACAGACAAGTATACCTACTCGCCCTTACGGATTTGCTGATTCTTTCACATCAGCAGATGGTAGGTGA
Predicted protein sequences of Glyma02g40981
>Glyma02g40981.1   sequence type=predicted peptide   gene model=Glyma02g40981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQGTLSSHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELMTGRKALDETQPEDSMHLVTWFRKMSINKDSFRKAIDSAMELNEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR*






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