Glyma02g40640 - SoyBase

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Report for Sequence Feature Glyma02g40640

Feature Type:	gene_model
Chromosome:	Gm02
Start:	45874794
stop:	45877368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g40640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16370	AT	Annotation by Michelle Graham. TAIR10: acyl activating enzyme 5 \| chr5:5356823-5358481 REVERSE LENGTH=552	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1176	KOG	Acyl-CoA synthetase	JGI		ISS
PTHR24095	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24095:SF26	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_G7K5Y8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-succinylbenzoate-CoA ligase n=1 Tax=Medicago truncatula RepID=G7K5Y8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JHQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHQ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g40640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g40640

Paralog	Evidence	Comments
Glyma14g38920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g40640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g239500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g40640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g40640

Limit To All Plant Sequences

>Glyma02g40640.1   sequence type=CDS   gene model=Glyma02g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAGCTGAAGCCAAGTGCTGCTAACTCTTCCCCTCTCACTCCCCTCGGCTTCTTGGACAGAGCAGCCACCGTCCACGGCGACGTCCCTTCCGTTGTTTATAACAACACCACCTTCACGTGGTCCCAGACGCGCCGCCGATGCCTCCAGCTGGCCTCCGCCCTCTCCTCCCTTGGTATCCGCCGCGGCAGCGTCGTCTCCGTCGTGGCCCCCAACATCCCCGCCATGTACGAGCTCCACTTCGCCGTCCCCTTCGCCGGCGCAATCCTGAACAACATCAACACCCGCCTCGACGCCCGCACCGTCTCCGTGATCCTCCGCCACGCGAACTCCACGCTCGTCTTCGTCGACTGCGCCTCACGCGACCTCGTCCTCGAAGCCCTATCCCTCTTCCCTGAAAATCAAAGTCAACGCCCAACCCTAATTCTCATCACAGACGAAACCATCGAGAAAGCCTCACCCACCGTCGATTTCCTCGACACATACGAGGGGCTTGTAAGCAAGGGCGATCCGGGATTCAAGTGGGTTCTACCGAACTCCGAGTGGGACCCGATCGTACTTAACTACACTTCAGGAACGACGTCGTCTCCCAAAGGCGTTGTCCACTGCCACCGTGGAACGTTTATTGTTGCAGTGGACTCTCTTATTGATTGGGCGGTTCCGAAGAACCCGGTTTATCTCTGGACGCTTCCGATGTTCCACGCTAACGGCTGGAGCTTCCCGTATGGGATTGCTGCCGTGGGTGGAACTAATATCTGTGTCCGCAAGTTCGACGCTGAGATTGTTTACTCTCTCATAAAACGCCATCACGTGACTCACATGTGCGGCGCGCCGGTGGTGCTCAACATGTTAACCAACGCGAACTCCCCGTTGGAGAAACCGGTTCAGATCCTCACCGCCGGAGCGCCGCCTCCTGCGGCGGTGCTCTTCAGAACAGAGGCTTTGGGGTTTGTCGTGAGTCACGGGTATGGTTTGACTGAGACCGGAGGATTGGTGGTGTCATGCGCGTGGAAGGGGGAGTGGAACAAGTTGCCGGCGACGGAGAGGGCTCGGCTGAAGGCGAGGCAAGGGGTGAGAACGGTTGCAATGGCGGAAGTCGACGTGGTGGGTCCCACCGGGGAGAGCGTGAAGCGTGACGGGGTTAGCATCGGAGAAGTTGTGATGAAAGGAGGGTGTGTGATGTTAGGCTACCTAAAAGACCCTTCGGGAACAGCAAGTTGTTTCAAGAACGGTTGGTTCTACACCGGAGATGTTGGTGTGATGCATGAAGATGGGTACTTGGAGATCAAAGATAGGTCAAAGGATGTTATAATCAGTGGCGGCGAGAATTTGAGCAGCGTGGAGGTGGAGTCGATATTGTACGGGCATCCGGCGGTGAACGAGGCGGCGGTGGTGGCGAGGCCGCACGAGTATTGGGGAGAGACGCCGTGCGCGTTTGTGAGCTTGAAAAAAGGGATAAAAGAGAAAGAGAAACCCACTGAGAAGGACATAATTGAGTATTGTAGGGACAACATGCCGCATTATATGGTTCCCAAAACGGTTGTTTTCAAAGACGAGCTTCCTAAGACATCTACGGGGAAGATACAGAAGTTTGTGCTGAGACAAATCGCCAAGGAGATGGGGTCCTTCACGCAAAGTCGAATGTGA

Predicted protein sequences of Glyma02g40640

Limit To All Plant Sequences

>Glyma02g40640.1   sequence type=predicted peptide   gene model=Glyma02g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQLKPSAANSSPLTPLGFLDRAATVHGDVPSVVYNNTTFTWSQTRRRCLQLASALSSLGIRRGSVVSVVAPNIPAMYELHFAVPFAGAILNNINTRLDARTVSVILRHANSTLVFVDCASRDLVLEALSLFPENQSQRPTLILITDETIEKASPTVDFLDTYEGLVSKGDPGFKWVLPNSEWDPIVLNYTSGTTSSPKGVVHCHRGTFIVAVDSLIDWAVPKNPVYLWTLPMFHANGWSFPYGIAAVGGTNICVRKFDAEIVYSLIKRHHVTHMCGAPVVLNMLTNANSPLEKPVQILTAGAPPPAAVLFRTEALGFVVSHGYGLTETGGLVVSCAWKGEWNKLPATERARLKARQGVRTVAMAEVDVVGPTGESVKRDGVSIGEVVMKGGCVMLGYLKDPSGTASCFKNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESILYGHPAVNEAAVVARPHEYWGETPCAFVSLKKGIKEKEKPTEKDIIEYCRDNMPHYMVPKTVVFKDELPKTSTGKIQKFVLRQIAKEMGSFTQSRM*

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