Glyma02g40530 - SoyBase

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Report for Sequence Feature Glyma02g40530

Feature Type:	gene_model
Chromosome:	Gm02
Start:	45797465
stop:	45801184
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g40530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10860	AT	Annotation by Michelle Graham. TAIR10: Cystathionine beta-synthase (CBS) family protein \| chr5:3429173-3430142 REVERSE LENGTH=206	SoyBase	E_val: 8.00E-117	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
PTHR11911	Panther	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	JGI		ISS
PTHR11911:SF26	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
UniRef100_G7K5X2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cbs domain protein n=1 Tax=Medicago truncatula RepID=G7K5X2_MEDTR	SoyBase	E_val: 1.00E-131	ISS
UniRef100_I1JHP9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHP9_SOYBN	SoyBase	E_val: 6.00E-148	ISS

Expression Patterns of Glyma02g40530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g40530 not represented in the dataset	Glyma02g40530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g40530

Paralog	Evidence	Comments
Glyma14g38840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g40530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g238700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g40530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g40530

Limit To All Plant Sequences

>Glyma02g40530.5   sequence type=transcript   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACCTAATTGCAAATTGCAATAATTATAATAACTAGACATAATAATAATAATAAAAAAATAGTAATAATATGGATAATGTCATGATCCAAAAGTATAGTGGGGCCCCACTCTCACGGTTATTGTGAGAGATTTTTAGGAACAAGTCAAGTGTTATCAGTGTCTTACGAGTGTAGGGCTCAGCTCAGCCATATTCTATCTCCACGCCGCTAACTCTCTCTCACACTCAGTCTCTGTGTCTCTCTCTCTTTCACACCCTTCACTTTACTCTCTCTCTCTGACAGCTAAAATGCAAGGAGGAATGAGATCATTTTTGTCACATGGGAATGTCATTAGAAATGCTGTTCTACAACGCGTGCGCATGGTGAACCCCCTGCTACAGACAATTGCCTCTTCGCGGTTTGAATCTGTTACGCCTGCTCGCATTGAGGAGCATGGTTTTGAGAGCACCACAATTTCAGACATCTTGAATGATAAAGGCAAGGGTGCTGATGGCTCCTGGCTTTGGTGCACCACAGATGATACTGTTTACGATGCTGTTAAATCAATGACCCAAAACAATGTTGGAGCTTTGGTTGTTGTGAAATCTGACGCGAATAAGGCAATTGCAGGAATTATTACTGAAAGAGATTACTTAAGAAAGATCATCGTGCAGGGAAGATCATCCAAGTCTACTAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACAGTCACCCCTGATACCAAAGTTCTGCAGGCTATGCAACTGATGACTGACAATAGAATCAGGCACATCCCCGTGATTGATGAAAAAGGGATGATTGGCATGGTGTCCATTGGAGATGTGGTTCGTGCTGTGGTGCGTGAGCACCGACAAGAGGTCGAGCGCTTGAATGCTTTCATACAAGGTGGTTATTAGATAATGATGATGAAAAATTCTCAAGGGCACTCAAGCTAATTTGAATTATGTAATAAGCTTGAGTGCTTGTAAATATGTTATGGCCACAGAGCCTTCTTGTTTGCTTTCCTGTAATTTCAGTTTTATGGGCATTAACCCGATGGAGTAGCAGCATGTTAATAATAACAACTGGATGCAGTTTGAATTTGTTTTGAATCATTTTTCACTAGTGAGTGCATGGACACAGTTTGCAAATGTTCACTTTTTTTTTTGTTTTTGCCGTATCAGGAAATTATGCTACAGTTGAAAATGCTACTTTTAGAAATATTATTACAAAAGTATTTAAAAAATATTCAGTTTGGTTA

>Glyma02g40530.6   sequence type=transcript   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACCTAATTGCAAATTGCAATAATTATAATAACTAGACATAATAATAATAATAAAAAAATAGTAATAATATGGATAATGTCATGATCCAAAAGTATAGTGGGGCCCCACTCTCACGGTTATTGTGAGAGATTTTTAGGAACAAGTCAAGTGTTATCAGTGTCTTACGAGTGTAGGGCTCAGCTCAGCCATATTCTATCTCCACGCCGCTAACTCTCTCTCACACTCAGTCTCTGTGTCTCTCTCTCTTTCACACCCTTCACTTTACTCTCTCTCTCTGGGTCGTGTTGTGGTTAACTGTGTTGATTGATTTGGTTTCTGGGGGACCAGTTTGGTTTTTGGTTTTGGTAAGCTTTTATATATATATATACATCCAATCCATGATGAGCCTTTGGTGATCTAAAGAAGCAAATCTGAATAGAGAGGAGAGAGCAGAGACAGCTAAAATGCAAGGAGGAATGAGATCATTTTTGTCACATGGGAATGTCATTAGAAATGCTGTTCTACAACGCGTGCGCATGGTGAACCCCCTGCTACAGACAATTGCCTCTTCGCGGTTTGAATCTGTTACGCCTGCTCGCATTGAGGAGCATGGTTTTGAGAGCACCACAATTTCAGACATCTTGAATGATAAAGGCAAGGGTGCTGATGGCTCCTGGCTTTGGTGCACCACAGATGATACTGTTTACGATGCTGTTAAATCAATGACCCAAAACAATGTTGGAGCTTTGGTTGTTGTGAAATCTGACGCGAATAAGGCAATTGCAGGAATTATTACTGAAAGAGATTACTTAAGAAAGATCATCGTGCAGGGAAGATCATCCAAGTCTACTAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACAGTCACCCCTGATACCAAAGTTCTGCAGGCTATGCAACTGATGACTGACAATAGAATCAGGCACATCCCCGTGATTGATGAAAAAGGGATGATTGGCATGGTGTCCATTGGAGATGTGGTTCGTGCTGTGGTGCGTGAGCACCGACAAGAGGTCGAGCGCTTGAATGCTTTCATACAAGGTGGTTATTAGATAATGATGATGAAAAATTCTCAAGGGCACTCAAGCTAATTTGAATTATGTAATAAGCTTGAGTGCTTGTAAATATGTTATGGCCACAGAGCCTTCTTGTTTGCTTTCCTGTAATTTCAGTTTTATGGGCATTAACCCGATGGAGTAGCAGCATGTTAATAATAACAACTGGATGCAGTTTGAATTTGTTTTGAATCATTTTTCACTAGTGAGTGCATGGACACAGTTTGCAAATGTTCACTTTTTTTTTTGTTTTTGCCGTATCAGGAAATTATGCTACAGTTGAAAATGCTACTTTTAGAAATATTATTACAAAAGTATTTAAAAAATATTCAGTTTGGTTA

>Glyma02g40530.7   sequence type=transcript   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACCTAATTGCAAATTGCAATAATTATAATAACTAGACATAATAATAATAATAAAAAAATAGTAATAATATGGATAATGTCATGATCCAAAAGTATAGTGGGGCCCCACTCTCACGGTTATTGTGAGAGATTTTTAGGAACAAGTCAAGTGTTATCAGTGTCTTACGAGTGTAGGGCTCAGCTCAGCCATATTCTATCTCCACGCCGCTAACTCTCTCTCACACTCAGTCTCTGTGTCTCTCTCTCTTTCACACCCTTCACTTTACTCTCTCTCTCTGCTAAAATGCAAGGAGGAATGAGATCATTTTTGTCACATGGGAATGTCATTAGAAATGCTGTTCTACAACGCGTGCGCATGGTGAACCCCCTGCTACAGACAATTGCCTCTTCGCGGTTTGAATCTGTTACGCCTGCTCGCATTGAGGAGCATGGTTTTGAGAGCACCACAATTTCAGACATCTTGAATGATAAAGGCAAGGGTGCTGATGGCTCCTGGCTTTGGTGCACCACAGATGATACTGTTTACGATGCTGTTAAATCAATGACCCAAAACAATGTTGGAGCTTTGGTTGTTGTGAAATCTGACGCGAATAAGGCAATTGCAGGAATTATTACTGAAAGAGATTACTTAAGAAAGATCATCGTGCAGGGAAGATCATCCAAGTCTACTAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACAGTCACCCCTGATACCAAAGTTCTGCAGGCTATGCAACTGATGACTGACAATAGAATCAGGCACATCCCCGTGATTGATGAAAAAGGGATGATTGGCATGGTGTCCATTGGAGATGTGGTTCGTGCTGTGGTGCGTGAGCACCGACAAGAGGTCGAGCGCTTGAATGCTTTCATACAAGGTGGTTATTAGATAATGATGATGAAAAATTCTCAAGGGCACTCAAGCTAATTTGAATTATGTAATAAGCTTGAGTGCTTGTAAATATGTTATGGCCACAGAGCCTTCTTGTTTGCTTTCCTGTAATTTCAGTTTTATGGGCATTAACCCGATGGAGTAGCAGCATGTTAATAATAACAACTGGATGCAGTTTGAATTTGTTTTGAATCATTTTTCACTAGTGAGTGCATGGACACAGTTTGCAAATGTTCACTTTTTTTTTTGTTTTTGCCGTATCAGGAAATTATGCTACAGTTGAAAATGCTACTTTTAGAAATATTATTACAAAAGTATTTAAAAAATATTCAGTTTGGTTA

Coding sequences of Glyma02g40530

Limit To All Plant Sequences

>Glyma02g40530.2   sequence type=CDS   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGAGGAATGAGATCATTTTTGTCACATGGGAATGTCATTAGAAATGCTGTTCTACAACGCGTGCGCATGGTGAACCCCCTGCTACAGACAATTGCCTCTTCGCGGTTTGAATCTGTTACGCCTGCTCGCATTGAGGAGCATGGTTTTGAGAGCACCACAATTTCAGACATCTTGAATGATAAAGGCAAGGGTGCTGATGGCTCCTGGCTTTGGTGCACCACAGATGATACTGTTTACGATGCTGTTAAATCAATGACCCAAAACAATGTTGGAGCTTTGGTTGTTGTGAAATCTGACGCGAATAAGGCAATTGCAGGAATTATTACTGAAAGAGATTACTTAAGAAAGATCATCGTGCAGGGAAGATCATCCAAGTCTACTAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACAGTCACCCCTGATACCAAAGTTCTGCAGGCTATGCAACTGATGACTGACAATAGAATCAGGCACATCCCCGTGATTGATGAAAAAGGGATGATTGGCATGGTGTCCATTGGAGATGTGGTTCGTGCTGTGGTGCGTGAGCACCGACAAGAGGTCGAGCGCTTGAATGCTTTCATACAAGGTGGTTATTAG

>Glyma02g40530.5   sequence type=CDS   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGAGGAATGAGATCATTTTTGTCACATGGGAATGTCATTAGAAATGCTGTTCTACAACGCGTGCGCATGGTGAACCCCCTGCTACAGACAATTGCCTCTTCGCGGTTTGAATCTGTTACGCCTGCTCGCATTGAGGAGCATGGTTTTGAGAGCACCACAATTTCAGACATCTTGAATGATAAAGGCAAGGGTGCTGATGGCTCCTGGCTTTGGTGCACCACAGATGATACTGTTTACGATGCTGTTAAATCAATGACCCAAAACAATGTTGGAGCTTTGGTTGTTGTGAAATCTGACGCGAATAAGGCAATTGCAGGAATTATTACTGAAAGAGATTACTTAAGAAAGATCATCGTGCAGGGAAGATCATCCAAGTCTACTAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACAGTCACCCCTGATACCAAAGTTCTGCAGGCTATGCAACTGATGACTGACAATAGAATCAGGCACATCCCCGTGATTGATGAAAAAGGGATGATTGGCATGGTGTCCATTGGAGATGTGGTTCGTGCTGTGGTGCGTGAGCACCGACAAGAGGTCGAGCGCTTGAATGCTTTCATACAAGGTGGTTATTAG

>Glyma02g40530.6   sequence type=CDS   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGAGGAATGAGATCATTTTTGTCACATGGGAATGTCATTAGAAATGCTGTTCTACAACGCGTGCGCATGGTGAACCCCCTGCTACAGACAATTGCCTCTTCGCGGTTTGAATCTGTTACGCCTGCTCGCATTGAGGAGCATGGTTTTGAGAGCACCACAATTTCAGACATCTTGAATGATAAAGGCAAGGGTGCTGATGGCTCCTGGCTTTGGTGCACCACAGATGATACTGTTTACGATGCTGTTAAATCAATGACCCAAAACAATGTTGGAGCTTTGGTTGTTGTGAAATCTGACGCGAATAAGGCAATTGCAGGAATTATTACTGAAAGAGATTACTTAAGAAAGATCATCGTGCAGGGAAGATCATCCAAGTCTACTAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACAGTCACCCCTGATACCAAAGTTCTGCAGGCTATGCAACTGATGACTGACAATAGAATCAGGCACATCCCCGTGATTGATGAAAAAGGGATGATTGGCATGGTGTCCATTGGAGATGTGGTTCGTGCTGTGGTGCGTGAGCACCGACAAGAGGTCGAGCGCTTGAATGCTTTCATACAAGGTGGTTATTAG

>Glyma02g40530.7   sequence type=CDS   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGAGGAATGAGATCATTTTTGTCACATGGGAATGTCATTAGAAATGCTGTTCTACAACGCGTGCGCATGGTGAACCCCCTGCTACAGACAATTGCCTCTTCGCGGTTTGAATCTGTTACGCCTGCTCGCATTGAGGAGCATGGTTTTGAGAGCACCACAATTTCAGACATCTTGAATGATAAAGGCAAGGGTGCTGATGGCTCCTGGCTTTGGTGCACCACAGATGATACTGTTTACGATGCTGTTAAATCAATGACCCAAAACAATGTTGGAGCTTTGGTTGTTGTGAAATCTGACGCGAATAAGGCAATTGCAGGAATTATTACTGAAAGAGATTACTTAAGAAAGATCATCGTGCAGGGAAGATCATCCAAGTCTACTAAGGTTGGAGATATTATGACTGAAGAGAACAAACTTATCACAGTCACCCCTGATACCAAAGTTCTGCAGGCTATGCAACTGATGACTGACAATAGAATCAGGCACATCCCCGTGATTGATGAAAAAGGGATGATTGGCATGGTGTCCATTGGAGATGTGGTTCGTGCTGTGGTGCGTGAGCACCGACAAGAGGTCGAGCGCTTGAATGCTTTCATACAAGGTGGTTATTAG

Predicted protein sequences of Glyma02g40530

Limit To All Plant Sequences

>Glyma02g40530.2   sequence type=predicted peptide   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGGMRSFLSHGNVIRNAVLQRVRMVNPLLQTIASSRFESVTPARIEEHGFESTTISDILNDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLQAMQLMTDNRIRHIPVIDEKGMIGMVSIGDVVRAVVREHRQEVERLNAFIQGGY*

>Glyma02g40530.5   sequence type=predicted peptide   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGGMRSFLSHGNVIRNAVLQRVRMVNPLLQTIASSRFESVTPARIEEHGFESTTISDILNDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLQAMQLMTDNRIRHIPVIDEKGMIGMVSIGDVVRAVVREHRQEVERLNAFIQGGY*

>Glyma02g40530.6   sequence type=predicted peptide   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGGMRSFLSHGNVIRNAVLQRVRMVNPLLQTIASSRFESVTPARIEEHGFESTTISDILNDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLQAMQLMTDNRIRHIPVIDEKGMIGMVSIGDVVRAVVREHRQEVERLNAFIQGGY*

>Glyma02g40530.7   sequence type=predicted peptide   gene model=Glyma02g40530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGGMRSFLSHGNVIRNAVLQRVRMVNPLLQTIASSRFESVTPARIEEHGFESTTISDILNDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPDTKVLQAMQLMTDNRIRHIPVIDEKGMIGMVSIGDVVRAVVREHRQEVERLNAFIQGGY*

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