Glyma02g40200 - SoyBase

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Report for Sequence Feature Glyma02g40200

Feature Type:	gene_model
Chromosome:	Gm02
Start:	45380086
stop:	45385677
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g40200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58350	AT	Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 4 \| chr5:23585505-23587681 FORWARD LENGTH=571	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0584	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF35	Panther	WNK5 (ARABIDOPSIS WNK KINASE 5)	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_C0M0Q3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C0M0Q3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7K0S2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: With no lysine kinase n=1 Tax=Medicago truncatula RepID=G7K0S2_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g40200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g40200

Paralog	Evidence	Comments
Glyma14g38390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g40200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g235700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g40200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g40200

Limit To All Plant Sequences

>Glyma02g40200.2   sequence type=transcript   gene model=Glyma02g40200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCATTATAAAATATACTTACAATCTGACAACAACAACAAATCACCACCTTCACAACTTCATTTCTCCCCTGTAATTGTTACCTCCCCTGCATCTCCTCACTCTGTTTTTTTGCATCTTCTTCCTCTGTTTCCCACCAATGATTACATCAAAGAGGGTCCACAGATTCTTCAAGTTCCGTGCCTTAGTGCTTTCTCTTATCTATGCCAACCATTCTTTGTGCCTTGTGAATGCCCAAAACTGACCCTGTCCCAAACTCTTACCTGCCACAAATCCCCTGCTAATACCCTGAATCAAAAAGGGGTACTTTGACACGAACCTGTCACTTTCCTTGTTAAATAGTATCTGCTTATTCTCCCATCCAATCACACCGTGCACCACTTTCTCTCCCTCCCCTTTGTAACTTTCGTTTTCAAATAGAACAAGAAACGAGAAAAACAAAATCAAATGGTTGCTAAGGACTATAACCACTTAACATGTACGGTTGTGAGCATGGGAAAAATGATGCAGAGCATTGACTATTCTAGACTTTTCTGGCTATTTTTTGGGATCTTCTCTCACGTAAATCATGAAGGAAAGCCTAGGATATAGGATAATACCATATTGAAATTTTGTTCTGCTTTCATTTTTTTCCCTTCTTGTTCTTCTCTGCAGTCTGCACAATTAAGTTGCAGCGTAAAAAAATTATAGTGTTTCAATAAATATAAGAGGTGGTTGCGAAGTTGGTGCATATAAATACGAATCAAACATGGGAGAAAATTGTTATGTGGAAACCGACCCAACTGGTCGGTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATCGATGAGGTGCTTGGAATTGAGGTAGCATGGAACCAGGTCAGACTCAACGAGGCGCTTCGCACGCCGGACGATTTGCAGCGGCTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCATCAGTCCATCATAAGATTCTACACTTCTTGGATTGATATTGATAACAGGGCCTTCAACTTTATCACAGAATTGTTCACATCTGGGTCACTGAGAGAATACAGGAAGAATTATAAACGTGTCAACATACAAGCTATAAAGAATTGGGCTTGCCAAATCTTGCAAGGTCTTGTTTATCTACATTGCCATGATCCACCAGTGATCCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGTCATCTTGGACAAGTAAAAATTGGTGATCTGGGACTGGCTGCAATTCTTCGCGGTTCCCAATTAGCACATAGTGTTATAGGCACTCCTGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGCTGATGTATATTCATTTGGCATGTGTGTTCTGGAAATGCTCACATCTGAATATCCATATAGTGAATGTTCTAATCCAGCACAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCTTTTTTCCGGATTGAAGACATGGAAGCACAAAGATTTATTGGAAGATGCTTGGTACCTGCAGAAAAGAGACCATCAGCAAAAGAATTGTTGCTTGACCCTTTTCTTGTGTCTGATGATCCATCATCAACAAAGAAATTTGCAATTCAGAAACCATTTTTGAATGTCAATGAGATGGAGAAACTGCAATTAAGTGATGATCTTCCTAGGACTGGAATGAAAGTGATAGGGAAGCTGAACCCTGAAGATGACACTATCTTTCTCAAAGTGCAAATTTCTGATAAGGATGGTTCTGCTAGAAATGTATTTTTTCCCTTTGACATATTATCTGACACACCTATTGATGTTGCAACCGAGATGGTGAAAGAGTTGGAGATTGCAGATTGGGAGCCTTTTGAGATTGCAAATATGATTGACAGAGAGATATCTGCTCTGCTACCTCACAGAAGGCAAAGTAGTTGTTCAGATGCCTTCCACACATTCAATTATCTGGATGATGATTGTGATGATGATGAACCTCATCATCATTTCCGCTCGTTCTCTTCTAGTTCATCGTTCCAAGAATCAATGTCAGATTTAGTCAGCAAAATGATTTGCATGATGATACCAGTTCACGATGCTCTTCACAAGGGACATATTCCAACTTGAATTACTATTCTCTGGATGATCATCATCAAGAGTACAACGTGCCATCTTTGAGAAAAGATAAACTTCCCATCACAAAGAGTCACAACAAGGGCAAAAAGGTTTCCTCAGGCGAAGACTTGAGCAATTTCAACCAATATAAACTCATGGTAGGATCACAGGTTCCTCTCACTAGTAAAAGCAAGATGATGATGAACAATCATCATAGATTAACAAGGAACAGGTCATTGATTGATATAAGGAGCCAACTATTGCACCGTTCACTGGTTGAAGAGGTGAACAAAAGAAGGTTATTCAAGACAGTTGGTGCTGTGGAGAATATTGGATTTCAGGCACCTTGTGATGTTTCCACAAAAAGGTCACAGCATGTATGTGTTGCTCCAAATGAGAACTCTCCAAGGAGTGGCAAGGGAGGAAAAATTAAGAGATGATTTTTTTGAGAAATGAGTGTCTCTTAAACATTGAAAAATAATAGATGTGATGCATGCATAGCCTTCTGTGTTATATTTGGCCACTAAGATAGGAAAATATACACTGTTTGGGAGTTAGGTTCAGATGAATGTGATTATGTGTATAGATTATGGAGTGTGCTGAACAAAAAATGATTTTAGGCGATGGAGAACTTTTCCCAAGATGCTGGACCAACAAGCTCTACTATTTCTGTAGATGCATGGAAATGAAAGGAGATGCAGCTGGTCGACAAGCTAGGATTAAGATTCACTATGCCAGTGGTTTGTTTTACTAGTTGCTTTCTCATTTTTGGAACATACACTGATTTGTATGTTGTTAAAGATGATTGTATGTGAGCCCTTTGCTTTTGCTATCAGTTATAAAATTCAAAGAGCCATGTGGCAAAACTTTTTTCTAACAGAGGTCATGTGTGTATACGTAGTTTGTTTGTGGCATTGTTATTGTGACATGAACTTTGTCCATAGCAATCAATTTAGAAGTTTTAGATGTGATTGTTGATACTCGATCAAATTTGTCCAATTTAATCATGCATGCATAAAAAAATTAGAGGAG

Coding sequences of Glyma02g40200

Limit To All Plant Sequences

>Glyma02g40200.1   sequence type=CDS   gene model=Glyma02g40200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAAATTGTTATGTGGAAACCGACCCAACTGGTCGGTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATCGATGAGGTGCTTGGAATTGAGGTAGCATGGAACCAGGTCAGACTCAACGAGGCGCTTCGCACGCCGGACGATTTGCAGCGGCTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCATCAGTCCATCATAAGATTCTACACTTCTTGGATTGATATTGATAACAGGGCCTTCAACTTTATCACAGAATTGTTCACATCTGGGTCACTGAGAGAATACAGGAAGAATTATAAACGTGTCAACATACAAGCTATAAAGAATTGGGCTTGCCAAATCTTGCAAGGTCTTGTTTATCTACATTGCCATGATCCACCAGTGATCCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGTCATCTTGGACAAGTAAAAATTGGTGATCTGGGACTGGCTGCAATTCTTCGCGGTTCCCAATTAGCACATAGTGTTATAGGCACTCCTGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGCTGATGTATATTCATTTGGCATGTGTGTTCTGGAAATGCTCACATCTGAATATCCATATAGTGAATGTTCTAATCCAGCACAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCTTTTTTCCGGATTGAAGACATGGAAGCACAAAGATTTATTGGAAGATGCTTGGTACCTGCAGAAAAGAGACCATCAGCAAAAGAATTGTTGCTTGACCCTTTTCTTGTGTCTGATGATCCATCATCAACAAAGAAATTTGCAATTCAGAAACCATTTTTGAATGTCAATGAGATGGAGAAACTGCAATTAAGTGATGATCTTCCTAGGACTGGAATGAAAGTGATAGGGAAGCTGAACCCTGAAGATGACACTATCTTTCTCAAAGTGCAAATTTCTGATAAGGATGGTTCTGCTAGAAATGTATTTTTTCCCTTTGACATATTATCTGACACACCTATTGATGTTGCAACCGAGATGGTGAAAGAGTTGGAGATTGCAGATTGGGAGCCTTTTGAGATTGCAAATATGATTGACAGAGAGATATCTGCTCTGCTACCTCACAGAAGGCAAAGTAGTTGTTCAGATGCCTTCCACACATTCAATTATCTGGATGATGATTGTGATGATGATGAACCTCATCATCATTTCCGCTCGTTCTCTTCTAGTTCATCGTTCCAAGAATCAATGTCAGATTTAGTCAGCAAAGCTGAGGAAATATCAAGTGGATATTATTGGCTCCATGATGATTTGCATGATGATACCAGTTCACGATGCTCTTCACAAGGGACATATTCCAACTTGAATTACTATTCTCTGGATGATCATCATCAAGAGTACAACGTGCCATCTTTGAGAAAAGATAAACTTCCCATCACAAAGAGTCACAACAAGGGCAAAAAGGTTTCCTCAGGCGAAGACTTGAGCAATTTCAACCAATATAAACTCATGGTAGGATCACAGGTTCCTCTCACTAGTAAAAGCAAGATGATGATGAACAATCATCATAGATTAACAAGGAACAGGTCATTGATTGATATAAGGAGCCAACTATTGCACCGTTCACTGGTTGAAGAGGTGAACAAAAGAAGGTTATTCAAGACAGTTGGTGCTGTGGAGAATATTGGATTTCAGGCACCTTGTGATGTTTCCACAAAAAGGTCACAGCATGTATGTGTTGCTCCAAATGAGAACTCTCCAAGGAGTGGCAAGGGAGGAAAAATTAAGAGATGA

>Glyma02g40200.2   sequence type=CDS   gene model=Glyma02g40200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAAATTGTTATGTGGAAACCGACCCAACTGGTCGGTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATCGATGAGGTGCTTGGAATTGAGGTAGCATGGAACCAGGTCAGACTCAACGAGGCGCTTCGCACGCCGGACGATTTGCAGCGGCTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCATCAGTCCATCATAAGATTCTACACTTCTTGGATTGATATTGATAACAGGGCCTTCAACTTTATCACAGAATTGTTCACATCTGGGTCACTGAGAGAATACAGGAAGAATTATAAACGTGTCAACATACAAGCTATAAAGAATTGGGCTTGCCAAATCTTGCAAGGTCTTGTTTATCTACATTGCCATGATCCACCAGTGATCCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGTCATCTTGGACAAGTAAAAATTGGTGATCTGGGACTGGCTGCAATTCTTCGCGGTTCCCAATTAGCACATAGTGTTATAGGCACTCCTGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGCTGATGTATATTCATTTGGCATGTGTGTTCTGGAAATGCTCACATCTGAATATCCATATAGTGAATGTTCTAATCCAGCACAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCTTTTTTCCGGATTGAAGACATGGAAGCACAAAGATTTATTGGAAGATGCTTGGTACCTGCAGAAAAGAGACCATCAGCAAAAGAATTGTTGCTTGACCCTTTTCTTGTGTCTGATGATCCATCATCAACAAAGAAATTTGCAATTCAGAAACCATTTTTGAATGTCAATGAGATGGAGAAACTGCAATTAAGTGATGATCTTCCTAGGACTGGAATGAAAGTGATAGGGAAGCTGAACCCTGAAGATGACACTATCTTTCTCAAAGTGCAAATTTCTGATAAGGATGGTTCTGCTAGAAATGTATTTTTTCCCTTTGACATATTATCTGACACACCTATTGATGTTGCAACCGAGATGGTGAAAGAGTTGGAGATTGCAGATTGGGAGCCTTTTGAGATTGCAAATATGATTGACAGAGAGATATCTGCTCTGCTACCTCACAGAAGGCAAAGTAGTTGTTCAGATGCCTTCCACACATTCAATTATCTGGATGATGATTGTGATGATGATGAACCTCATCATCATTTCCGCTCGTTCTCTTCTAGTTCATCGTTCCAAGAATCAATGTCAGATTTAGTCAGCAAAATGATTTGCATGATGATACCAGTTCACGATGCTCTTCACAAGGGACATATTCCAACTTGA

Predicted protein sequences of Glyma02g40200

Limit To All Plant Sequences

>Glyma02g40200.1   sequence type=predicted peptide   gene model=Glyma02g40200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGENCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRTPDDLQRLYSEVHLLSTLKHQSIIRFYTSWIDIDNRAFNFITELFTSGSLREYRKNYKRVNIQAIKNWACQILQGLVYLHCHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQLAHSVIGTPEFMAPELYEEEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRIEDMEAQRFIGRCLVPAEKRPSAKELLLDPFLVSDDPSSTKKFAIQKPFLNVNEMEKLQLSDDLPRTGMKVIGKLNPEDDTIFLKVQISDKDGSARNVFFPFDILSDTPIDVATEMVKELEIADWEPFEIANMIDREISALLPHRRQSSCSDAFHTFNYLDDDCDDDEPHHHFRSFSSSSSFQESMSDLVSKAEEISSGYYWLHDDLHDDTSSRCSSQGTYSNLNYYSLDDHHQEYNVPSLRKDKLPITKSHNKGKKVSSGEDLSNFNQYKLMVGSQVPLTSKSKMMMNNHHRLTRNRSLIDIRSQLLHRSLVEEVNKRRLFKTVGAVENIGFQAPCDVSTKRSQHVCVAPNENSPRSGKGGKIKR*

>Glyma02g40200.2   sequence type=predicted peptide   gene model=Glyma02g40200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGENCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRTPDDLQRLYSEVHLLSTLKHQSIIRFYTSWIDIDNRAFNFITELFTSGSLREYRKNYKRVNIQAIKNWACQILQGLVYLHCHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQLAHSVIGTPEFMAPELYEEEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRIEDMEAQRFIGRCLVPAEKRPSAKELLLDPFLVSDDPSSTKKFAIQKPFLNVNEMEKLQLSDDLPRTGMKVIGKLNPEDDTIFLKVQISDKDGSARNVFFPFDILSDTPIDVATEMVKELEIADWEPFEIANMIDREISALLPHRRQSSCSDAFHTFNYLDDDCDDDEPHHHFRSFSSSSSFQESMSDLVSKMICMMIPVHDALHKGHIPT*

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