SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06950 | AT | Annotation by Michelle Graham. TAIR10: translocon at the inner envelope membrane of chloroplasts 110 | chr1:2130303-2135563 REVERSE LENGTH=1016 | SoyBase | E_val: 0 | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0045037 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0031897 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Tic complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| UniRef100_G7KFK1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast inner envelope protein (IEP110) n=1 Tax=Medicago truncatula RepID=G7KFK1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JHJ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHJ8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g39990 not represented in the dataset |
Glyma02g39990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g38140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g233700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g39990.1 sequence type=CDS gene model=Glyma02g39990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCCTTCCACACTCACCCCTTCCCACACCCACCGTCCTCTCCTCCTACCCTCTCCCTTCCACACCAGACGGCGTCGTTTTAAAGTCTCCCTCCCTCGCTGTTCCTCCTCCTCCGCCGCCTCCTCCCCCCCTCCTCCGCCACCTCCGCCGCCGCAGCGACCGCCCAAGGACCTCAAGGGAATCGATGTCCTCGTCGACAAGCTCTCGCCGCCGGCCAGGCTCGCCACCTCCGCCGTCATCGTCGCCGGCGCCGCGGCGGCTGGATACGGCCTCGGCTCCCGCTTCGGCGGAAGCCGCTACGCTGCGCTCGGTGGAGCTGTCGCCCTCGGCGCGGCCGGCGGTGCTGCGGCGTACGCTCTGAACGCGGCTGCTCCGCAAGTCGCCGCCGTGAATTTGCACAACTACGTCGCCGCGTTCGACGACCCTTCGAAGCTGAAGAAGGAAGAGATTGAGGCCATTGCGTCCAAGTATGGTGTGAGCAAGCAAGATGAGGCATTCAAAACTGAGATTTGTCATATATATTCCGAGTTTGTATCTTCTGTGCTTCCTCCTGGTGGTGAGGAACTTAAAGGTGATGAGGTTGATAGGATTGTCAGCTTCAAAAATTCTTTGGGAATTGATGACCCGGATGCTGCTGCTATGCACATGGAGATTGGGAGGAAATTTTTCAGGCAAAGGTTGGAAGTTGGGGATCGTGATGCTGATGTTGAGCAACGTCGGGCATTTCAAAAGTTGATATATGTGTCAAATCTTGTATTTGGAGATGCATCGTCTTTCCTTCTACCTTGGAAGCGTGTATTCAAGGTCACCGATTCCCAGATTGAAGTAGCTGTACGTGACAATGCGCAGCGATTGTTTGCTTCCAAGCTGAAATCAGTTGGCAGAGATATTGATGCAGAAAAACTTGTTGCACTAAGAAAAGAACAACAATTATGTCGCCTTTCTGATGAGCTTGCTGAGAACTTGTTTAGAGATCACACAAGGAAATTGGTTGAGGAAAATATTTCAGAGGCAAATAGAATACTTAAATCTCGCACCAAAGCAGTTCCTGGAGCTACGCAGGCAATTGCAGAGCTGGATAAGGTATTGGCATTTAATAATTTACTCATCTCATTTAAGAATCATCCAGATGTGGATCGCTTTGCTCGTGGTGTTGGTCCAATTTCTTTAGTGGGTGGAGAGTATGATGGTGACAGAAAAATAGAGGACTTGAAACTCCTTTACAGGGCATATGTTTCAGATGCTTTGTCTGGTGGGCGCATGGAAGATGATAAGCTTGCTGCACTAAATCAGTTACGAAATATATTCGGACTGGGTAAACGTGAAGCCGAGGCCATTTCACTTGATGTTACGTCGAAGGTATATCGCAAACGACTTGCACAGGCTGCTGCAGATGGTGAGTTAGAAATGGCTGATAGCAAAGCAGCCTTCCTTCAAAATCTATGTGATGAACTTCATTTTGATCCACAAAAGGCCAGTGAACTTCATGAAGAAATTTATCGGCAAAAGCTTCAGAGATGTGTAGCTGATGGGGAGCTCAATGAGGAGGATGTTGCTGCTTTGTTGAGGATGCGTGTAATGCTCTGCATACCGCAACAGATTGTTGAAGCAGCTCATTCAGATATCTGTGGCAGTTTGTTTGAAAAGGTTGTCAAGGAGGCAATTGCATCAGGGGTTGATGGATATGATGCTGAAATCCAGAAATCAGTAAGAAAAGCAGCACATGGCCTGCGACTTACTAGGGAGGTTGCTATGTCTATTGCAAGCAAGGCGGTAAGGAAGATTTTTATTAATTACATAAAACGTGCACGGGCAGCTGGAAATCGTACCGAGTCTGCGAAAGAACTGAAGAAGATGATAGCCTTCAACACCTTAGTTGTAACTAATTTGGTGGAGGACATTAAAGGGGAGTCAACTGATATTTCCTCTGAAGAACCTGTGAAAGAGGACATTACACAAACTGACGATGAAGAATGGGAATCACTTCAGACACTCAAGAAAATAAGACCAAATAAAGAACTTACGGAAAAGTTGGGAAAACCTGGTCAGACAGAAATTACTCTGAAAGATGATCTTCCTGAAAGGGATAGGACTGATCTTTACAAGACATACTTACTTTATTGTCTAACTGGTGAAGTGACAAGGGTTCCATTTGGTGCTCAGATCACTACTAAGAAGGATGATTCTGAGTATCTTCTTCTAAATCAGCTTGGTGGGATCCTGGGATTGAGTAGTCAAGAAATAGTGGAAGTGCACAGGGGTCTAGCTGAGCAGGCTTTTAGGCAACAGGCTGAGGTAATTTTAGCCGATGGACAGTTGACAAAGGCCAGGGTGGAGCAGCTTAATAACCTCCAGAAACAAGTAGGCTTACCTCAAGAATATGCTCAGAAAATAATCAAGAGTATAACCACTACAAAAATGGCAGCTGCCATTGAAACTGCTGTAACTCAAGGGAGGCTCAATATGAAGCAGATAAGGGAACTTAAGGAAGCTGATGTTGATTTAGACAGTATGGTATCTGAGAACTTGAGAGAGACCCTCTTCAAAAAAACTGTTGATGACATTTTCTCATCCGGTACTGGAGAGTTTGACACTGAGGAAGTATATGAAAAAATCCCGTCAGATCTCAACATTAACAAAGAGAAGGCACGAGGTGTTGTTCATGAGCTTGCAAAGGGTAGACTATCCAACTCTCTGATTCAGGCTGTCTCTCTACTAAGACAGAGAAATCAGCAGGGAGTGGTTTCTTCACTCAATGACTTGCTGGCATGTGACAAAGCAGTACCCTCACAGCCAGTTTCATGGGAAGTGCCAGAGGAGCTTTCTGATCTATACACCATATACTTGAAGAGTAATCCAACTCCTGAGAATTTGTCTCGTTTGCAATATCTGTTGGGTATAAATGATTCCACAGCTGCTGCTCTTAGGGAGATTGGAGATAGATTACTCAATACTACTGCGGAGGAAGAGAAGTTTGTATTCTAG
>Glyma02g39990.1 sequence type=predicted peptide gene model=Glyma02g39990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPSTLTPSHTHRPLLLPSPFHTRRRRFKVSLPRCSSSSAASSPPPPPPPPPQRPPKDLKGIDVLVDKLSPPARLATSAVIVAGAAAAGYGLGSRFGGSRYAALGGAVALGAAGGAAAYALNAAAPQVAAVNLHNYVAAFDDPSKLKKEEIEAIASKYGVSKQDEAFKTEICHIYSEFVSSVLPPGGEELKGDEVDRIVSFKNSLGIDDPDAAAMHMEIGRKFFRQRLEVGDRDADVEQRRAFQKLIYVSNLVFGDASSFLLPWKRVFKVTDSQIEVAVRDNAQRLFASKLKSVGRDIDAEKLVALRKEQQLCRLSDELAENLFRDHTRKLVEENISEANRILKSRTKAVPGATQAIAELDKVLAFNNLLISFKNHPDVDRFARGVGPISLVGGEYDGDRKIEDLKLLYRAYVSDALSGGRMEDDKLAALNQLRNIFGLGKREAEAISLDVTSKVYRKRLAQAAADGELEMADSKAAFLQNLCDELHFDPQKASELHEEIYRQKLQRCVADGELNEEDVAALLRMRVMLCIPQQIVEAAHSDICGSLFEKVVKEAIASGVDGYDAEIQKSVRKAAHGLRLTREVAMSIASKAVRKIFINYIKRARAAGNRTESAKELKKMIAFNTLVVTNLVEDIKGESTDISSEEPVKEDITQTDDEEWESLQTLKKIRPNKELTEKLGKPGQTEITLKDDLPERDRTDLYKTYLLYCLTGEVTRVPFGAQITTKKDDSEYLLLNQLGGILGLSSQEIVEVHRGLAEQAFRQQAEVILADGQLTKARVEQLNNLQKQVGLPQEYAQKIIKSITTTKMAAAIETAVTQGRLNMKQIRELKEADVDLDSMVSENLRETLFKKTVDDIFSSGTGEFDTEEVYEKIPSDLNINKEKARGVVHELAKGRLSNSLIQAVSLLRQRNQQGVVSSLNDLLACDKAVPSQPVSWEVPEELSDLYTIYLKSNPTPENLSRLQYLLGINDSTAAALREIGDRLLNTTAEEEKFVF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
