Glyma02g39870 - SoyBase

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Report for Sequence Feature Glyma02g39870

Feature Type:	gene_model
Chromosome:	Gm02
Start:	45077200
stop:	45080698
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g39870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38470	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 33 \| chr2:16108476-16110539 FORWARD LENGTH=519	SoyBase	E_val: 8.00E-113	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009595	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010120	GO-bp	Annotation by Michelle Graham. GO Biological Process: camalexin biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0010508	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of autophagy	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0034605	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to heat	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0043900	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0070370	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular heat acclimation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B2G284	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-binding protein n=1 Tax=Vitis thunbergii RepID=B2G284_9ROSI	SoyBase	E_val: 0	ISS
UniRef100_I1JHI8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JHI8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g39870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g39870

Paralog	Evidence	Comments
Glyma14g38010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g39870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g232600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g39870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g39870

Limit To All Plant Sequences

>Glyma02g39870.1   sequence type=CDS   gene model=Glyma02g39870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCTTCTTCTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCTTTCATGACCACTTCTTTCTCTGACCTTCTTGCTTCTCCCACAGACAACAACAAACCACCACATGGTGGTGGTGGTGGTTTGTCTGAGAGAACTGGCTCTGGTGTCCCCAAATTCAAGTCCACACCACCACCTTCTCTGCCTCTCTCTCCCCCTCCCATTTCTCCTTCTTCCTACTTTTCTATTCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCACCTGTTCTCCTTAACTCTTCCAACATTCTGCCATCTCCAACAACTGGAGCATTTGTTGCTCGGAGCTTCAATTGGAAGAGCAGTTCCGGGGGGAACCAGCGAATTGTCAAAGAAGAAGACAAAGGCTTCTCAAATTTCTCCTTTCAAACCCAACAAGGACCTCCTGCTTCATCCACAGCAACATATCAGTCTTCAAATGTCACAGTTCAAACACAACAGCCATGGAGTTATCAGGAGACCACAAAGCAGGATAATTTTTCTTCAGGAAAGAGCATGATGAAAACTGAAAAATCTTCATCCATGCAAAGTTTTTCCCCTGAGATTGCTAGTGTCCAAAATAATCATAGCAATGGGTTTCAATCGGATTATGGCAATTACCCCCCACAATCTCAGACCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGCCAAAAACAAGTGAAGGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCCAACTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATCGTTTATAAGGGTACTCATAACCATCCTAAGCCTCAAAATACTAGGAGAAACTCATCAAATTCCTCTTCTCTTGCAATCCCTCATTCAAATCCCATCAGCGCTGAAATCCCAGATCAATCCTATGCCACACATGGAAGTGGACAAATGGATTCAGCTGCCACCCCAGAAAACTCATCAATATCAATTGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCAGGAGGGGATGAATATGATGAAGATGAACCTGATGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTATGTCTGCCCCTGGAAGTAGAACAGTAAGAGAACCTAGAGTTGTAGTTCAGACAACCAGTGACATTGATATCCTAGATGATGGGTATAGATGGAGAAAATACGGGCAGAAAGTAGTGAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGTACACACCCAGGATGTCCAGTGAGGAAGCATGTGGAAAGAGCTTCACATGACCTAAGGGCTGTGATCACAACCTATGAGGGGAAGCACAACCATGATGTTCCTGCAGCTCGTGGCAGTGGCAGCCATTCTGTTAACAGACCAATGCCAAACAATGCTTCAAACCCTACCAACACTGCAGCCACTGCCATAAGTCCCTTGCAAGTGATCCAACACAGTGACAATTCCCATCAGAACCAAAGATCTCAAGCACCACCAGAGGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTCCAGGAAGTTTTGGATTCTCAGGGTTTGGGAATCCAATGCAATCTTACATGAATCAGCAGCAACAACAACTATCTGACAATGTTTTCTCTTCCAGAGCCAAGGAGGAGCCTAGAGATGACATGTTCCTTGAGTCTCTACTATGCTGA

Predicted protein sequences of Glyma02g39870

Limit To All Plant Sequences

>Glyma02g39870.1   sequence type=predicted peptide   gene model=Glyma02g39870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSGSLDTSASANSFTNFTFSTHPFMTTSFSDLLASPTDNNKPPHGGGGGLSERTGSGVPKFKSTPPPSLPLSPPPISPSSYFSIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVARSFNWKSSSGGNQRIVKEEDKGFSNFSFQTQQGPPASSTATYQSSNVTVQTQQPWSYQETTKQDNFSSGKSMMKTEKSSSMQSFSPEIASVQNNHSNGFQSDYGNYPPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSNSSSLAIPHSNPISAEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGGDEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPMPNNASNPTNTAATAISPLQVIQHSDNSHQNQRSQAPPEGQSPFTLEMLQSPGSFGFSGFGNPMQSYMNQQQQQLSDNVFSSRAKEEPRDDMFLESLLC*

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