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Report for Sequence Feature Glyma02g39750

Feature Type:gene_model
Chromosome:Gm02
Start:44958918
stop:44962111
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g39750
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30210AT Annotation by Michelle Graham. TAIR10: laccase 3 | chr2:12887735-12889827 REVERSE LENGTH=570 SoyBaseE_val: 0ISS
GO:0046274GO-bp Annotation by Michelle Graham. GO Biological Process: lignin catabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0052716GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF9Panther LACCASE JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_G7JZP3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Laccase-like multicopper oxidase n=1 Tax=Medicago truncatula RepID=G7JZP3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JHH8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHH8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g39750
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g39750
ParalogEvidenceComments
Glyma14g37810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g39750 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g231600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g39750
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g39750
>Glyma02g39750.1   sequence type=CDS   gene model=Glyma02g39750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATTATCCACCTCTCTGGCAAGTCATGTTGCTCTTGGTTCTTACTAGGCCTACTCTCTATCATTGCTTCCCTTGCTTCAGCTGCAGAGAATCACTACCATGAGTTTGTTATTCAAACTGTGCCAGTGAAGAGGCTGTGCAGAACCCAAAACATACTCACTGTAAATGGCCAGTTTCCTGGCCCAACAGTGGAAGCAAGAAATGGAGATTCCCTTGCAATTAAAGTAGTCAATGCTGGACCATACAACATCTCCATCCACTGGCATGGGTTAAGGATGTTGAGAAATCCATGGGCAGATGGGCCTAGTTATGTGACTCAGTGTCCCATTCAACCAGGGGGAAGTTACACATACCGCTTTACAATCCAAAACCAAGAGGGCACACTATGGTGGCATGCTCACACTGGTTTTCTAAGAGCCACTGTCTATGGAGCTCTCATCATTTATCCAAAATTAGGTTCTCCTTATCCTTTCTCTATGCCTAAGAGAGAATATCCCCTCCTTCTTGCGGAATGGTTTAATAGGGATCCAATGGTTCTCTTAAGACAGACACAATTCACAGGAGCACCTCCAAATGTATCTGTTGCATACACAATTAACGGTCAACCCGGAGATCTCTACAGATGTTCAAGTCAAGAAACTGTTCGAGTTCCAGTTGATGCTGGCGAGACAATTCTCTTGAGAATCATCAACAGTGCACTCAATCAAGAACTCTTCTTCACAATTGCAAACCACAGGATGACTGTTGTTGCTACTGATGCTGCTTACACCAAGCCTTTCACCACCAATGTCCTCATGATAGGTCCTGGTCAGACAATCAATGTCCTGGTCACTGCTGATCAAACCCCCGGGCGATACTACATGGCAGCGCGCGCATATCAAACCGCGATGAATGCTGCATTTGACAACACCACCACCACTGCAATCCTAGAATACAAATCCGCCACCTGCAGCAAAAAAAATGGACAGCTCCCGAGACCAATTCTGCCAGTGTTGCCGGCTTTCAACGACACAGCCACAGCAACAGCATACACAGCTGGGATCAGAGGCCTTTCCAAGATCAATGTCTTCACAAATGTTGATGTGAGCTTATATTTCATTGTTGGGTTGGGGCTAATCAACTGCACAAATCCTAATAGTCCAAGATGCCAAGGTCCAAACGGAACCCGATTCGCGGCTAGCATAAACAACCATTCCTTTGTGCTCCCAACAACCACATCCTTAATGCAAGCCTACTATAATGGTATTCCTGGTGTTTTCACCACAGACTTTCCTCCAGTTCCTCCAGTGCAATTCAATTACACCGGCAATGTACCCCGGGGGCTGTGGACTCCTGCAAGAGGAACTAAGCTCTTCAAGTTGAAGTATGGTTCCAATGTGCAAATTGTTCTACAGGACACAAGCATAGTGACTACTGAGGACCACCCTATGCATGTTCATGGATTCCACTTCTTTGTAGTTGGTTCAGGCTTTGGAAACTTCAATCCGGCAACTGATCCTGCAAGGTTTAACCTTGTGGACCCGCCTGTGAGGAACACCATAGGAACACCACCAGGAGGATGGGTGGCCATTCGTTTCGTGGCTGATAATCCAGGAATTTGGTTCTTGCATTGTCACATAGACTCACATCTGAATTGGGGTCTGGGAACGGCACTTTTGGTAGAAAATGGAGTTGGCCCATCACAGTCAGTGATTCCTCCACCACCGGATCTGCCACAGTGTTAA
Predicted protein sequences of Glyma02g39750
>Glyma02g39750.1   sequence type=predicted peptide   gene model=Glyma02g39750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIIHLSGKSCCSWFLLGLLSIIASLASAAENHYHEFVIQTVPVKRLCRTQNILTVNGQFPGPTVEARNGDSLAIKVVNAGPYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRATVYGALIIYPKLGSPYPFSMPKREYPLLLAEWFNRDPMVLLRQTQFTGAPPNVSVAYTINGQPGDLYRCSSQETVRVPVDAGETILLRIINSALNQELFFTIANHRMTVVATDAAYTKPFTTNVLMIGPGQTINVLVTADQTPGRYYMAARAYQTAMNAAFDNTTTTAILEYKSATCSKKNGQLPRPILPVLPAFNDTATATAYTAGIRGLSKINVFTNVDVSLYFIVGLGLINCTNPNSPRCQGPNGTRFAASINNHSFVLPTTTSLMQAYYNGIPGVFTTDFPPVPPVQFNYTGNVPRGLWTPARGTKLFKLKYGSNVQIVLQDTSIVTTEDHPMHVHGFHFFVVGSGFGNFNPATDPARFNLVDPPVRNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLGTALLVENGVGPSQSVIPPPPDLPQC*






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