SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G58490 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:23643068-23644455 FORWARD LENGTH=324 | SoyBase | E_val: 0 | ISS |
| GO:0009809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016621 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cinnamoyl-CoA reductase activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1502 | KOG | Flavonol reductase/cinnamoyl-CoA reductase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF9 | Panther | NAD(P)H STEROID DEHYDROGENASE-RELATED | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_G7KEC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol 4-reductase-like protein n=1 Tax=Medicago truncatula RepID=G7KEC3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B3FE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B3FE related cluster n=1 Tax=unknown RepID=UPI000233B3FE | SoyBase | E_val: 0 | ISS |
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Glyma02g39630 not represented in the dataset |
Glyma02g39630 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g37680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g230500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g39630.2 sequence type=transcript gene model=Glyma02g39630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAATAATAACAAGTAGATTTATCATGAGAAATTTTTATTGGACATAAAACAAACGAATCCTCAAGCTATTAGCTATAGTAGATTACACTGAAACATTAAAAAACTGGAGGTTGATAGTTAATCTATCTGCAACAGCAACATTGTGACAGTGACAGTGTCGTAGGATGGAGAAGGTGGTATGTGTGACCGGCGGCAGCGGCTGCATTGGTTCATGGCTCGTCCATCTCCTCTTGGATCGCGGCTACACCGTTCACGCCACCGTCCAAAACCTCAACGATGAAGCCGAGACGAAGCATCTTCAATCCCTCGACGGAGCGTCCACGCGCCTCCGCCTCTTCCAGATGGATCTCCTCCGCCACGACACCGTCCTCGCCGCCGTGCGTGGCTGCGCCGGCGTCTTCCACCTCGCCTCTCCCTGCATTGTCGACCAAGTCCACGACCCCCAGAAGGAGCTTCTGGACCCGGCGATTAAGGGAACCATGAACGTGCTCACGGCGGCGAAGGAAGCAGGGGTGCGGCGCGTGGTGCTCACGTCCTCCATCTCCGCGGTTACGCCGAGCCCCAATTGGCCCGGCGATGTTGCCAAGACGGAGGAGTGCTGGACCGACGTTGAATATTGCAAGCAAAAGGGGTTGTGGTATCCATTGTCGAAGACTTTAGCTGAGAAAGCTGCTTGGGATTTTGCTAAAGAGAATGATTTGGATGTTGTGGTGGTGAATCCTGGCACTGTGATGGGTCCTGTTATTCCACCAAGGCTTAATGCGAGCATGGTCATGCTCGTGCGCCTTCTACAAGGCTGTGCCGAAACATATGAGGACTTTTTTATGGGATCGGTCCACTTTAAGGATGTAGCATTGGCACATATTTTGGTGTATGAGAACAAATCAGCGGCTGGTAGGCATTTGTGTGTTGAAGCTATCTCTCACTATGGTGACTTTGTGGCAAAAGTTGCTGAACTCTATCCAGAGTATAATGTGCCTAAGTAAGCCACACACTTGATACATGTATTGGCAATGCTATGCAATCATCTTTTGGATGCAACGAGATACCCAGCCGGGATTATTGAGAACAAAGGATGGAGCAAAGAAACTGATGGATTTGGGTTTGCAATTCATTCCAATGGAGAAGATTATTAAGGATGCTGTAGAGGATTTGAAGAGCAAAGGGTTCCTTTCATAAATAATGCTGCTGCTGCTGCTATTTAGAACCAGAGTGTAATGTTTGCAATATGAGTACTTATGACACGAGCCTGTAATGTATAGTCTGTTTCCTCTATGCCTATGATGCTATGCAAATTGGCGCTGACTCGATATGTATTTTCAATCTGATGCTTTTTTATTAATAAAAAATAAAAGCTAGAATAGACCGGGAGAGGTTAAGGACTTGAATATCACTGACTCTCATGGATATTTTCAACATTTTCCTGAA
>Glyma02g39630.1 sequence type=CDS gene model=Glyma02g39630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGGTGGTATGTGTGACCGGCGGCAGCGGCTGCATTGGTTCATGGCTCGTCCATCTCCTCTTGGATCGCGGCTACACCGTTCACGCCACCGTCCAAAACCTCAACGATGAAGCCGAGACGAAGCATCTTCAATCCCTCGACGGAGCGTCCACGCGCCTCCGCCTCTTCCAGATGGATCTCCTCCGCCACGACACCGTCCTCGCCGCCGTGCGTGGCTGCGCCGGCGTCTTCCACCTCGCCTCTCCCTGCATTGTCGACCAAGTCCACGACCCCCAGAAGGAGCTTCTGGACCCGGCGATTAAGGGAACCATGAACGTGCTCACGGCGGCGAAGGAAGCAGGGGTGCGGCGCGTGGTGCTCACGTCCTCCATCTCCGCGGTTACGCCGAGCCCCAATTGGCCCGGCGATGTTGCCAAGACGGAGGAGTGCTGGACCGACGTTGAATATTGCAAGCAAAAGGGGTTGTGGTATCCATTGTCGAAGACTTTAGCTGAGAAAGCTGCTTGGGATTTTGCTAAAGAGAATGATTTGGATGTTGTGGTGGTGAATCCTGGCACTGTGATGGGTCCTGTTATTCCACCAAGGCTTAATGCGAGCATGGTCATGCTCGTGCGCCTTCTACAAGGCTGTGCCGAAACATATGAGGACTTTTTTATGGGATCGGTCCACTTTAAGGATGTAGCATTGGCACATATTTTGGTGTATGAGAACAAATCAGCGGCTGGTAGGCATTTGTGTGTTGAAGCTATCTCTCACTATGGTGACTTTGTGGCAAAAGTTGCTGAACTCTATCCAGAGTATAATGTGCCTAAGATGCAACGAGATACCCAGCCGGGATTATTGAGAACAAAGGATGGAGCAAAGAAACTGATGGATTTGGGTTTGCAATTCATTCCAATGGAGAAGATTATTAAGGATGCTGTAGAGGATTTGAAGAGCAAAGGGTTCCTTTCATAA >Glyma02g39630.2 sequence type=CDS gene model=Glyma02g39630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGGTGGTATGTGTGACCGGCGGCAGCGGCTGCATTGGTTCATGGCTCGTCCATCTCCTCTTGGATCGCGGCTACACCGTTCACGCCACCGTCCAAAACCTCAACGATGAAGCCGAGACGAAGCATCTTCAATCCCTCGACGGAGCGTCCACGCGCCTCCGCCTCTTCCAGATGGATCTCCTCCGCCACGACACCGTCCTCGCCGCCGTGCGTGGCTGCGCCGGCGTCTTCCACCTCGCCTCTCCCTGCATTGTCGACCAAGTCCACGACCCCCAGAAGGAGCTTCTGGACCCGGCGATTAAGGGAACCATGAACGTGCTCACGGCGGCGAAGGAAGCAGGGGTGCGGCGCGTGGTGCTCACGTCCTCCATCTCCGCGGTTACGCCGAGCCCCAATTGGCCCGGCGATGTTGCCAAGACGGAGGAGTGCTGGACCGACGTTGAATATTGCAAGCAAAAGGGGTTGTGGTATCCATTGTCGAAGACTTTAGCTGAGAAAGCTGCTTGGGATTTTGCTAAAGAGAATGATTTGGATGTTGTGGTGGTGAATCCTGGCACTGTGATGGGTCCTGTTATTCCACCAAGGCTTAATGCGAGCATGGTCATGCTCGTGCGCCTTCTACAAGGCTGTGCCGAAACATATGAGGACTTTTTTATGGGATCGGTCCACTTTAAGGATGTAGCATTGGCACATATTTTGGTGTATGAGAACAAATCAGCGGCTGGTAGGCATTTGTGTGTTGAAGCTATCTCTCACTATGGTGACTTTGTGGCAAAAGTTGCTGAACTCTATCCAGAGTATAATGTGCCTAAGTAA
>Glyma02g39630.1 sequence type=predicted peptide gene model=Glyma02g39630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKVVCVTGGSGCIGSWLVHLLLDRGYTVHATVQNLNDEAETKHLQSLDGASTRLRLFQMDLLRHDTVLAAVRGCAGVFHLASPCIVDQVHDPQKELLDPAIKGTMNVLTAAKEAGVRRVVLTSSISAVTPSPNWPGDVAKTEECWTDVEYCKQKGLWYPLSKTLAEKAAWDFAKENDLDVVVVNPGTVMGPVIPPRLNASMVMLVRLLQGCAETYEDFFMGSVHFKDVALAHILVYENKSAAGRHLCVEAISHYGDFVAKVAELYPEYNVPKMQRDTQPGLLRTKDGAKKLMDLGLQFIPMEKIIKDAVEDLKSKGFLS* >Glyma02g39630.2 sequence type=predicted peptide gene model=Glyma02g39630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKVVCVTGGSGCIGSWLVHLLLDRGYTVHATVQNLNDEAETKHLQSLDGASTRLRLFQMDLLRHDTVLAAVRGCAGVFHLASPCIVDQVHDPQKELLDPAIKGTMNVLTAAKEAGVRRVVLTSSISAVTPSPNWPGDVAKTEECWTDVEYCKQKGLWYPLSKTLAEKAAWDFAKENDLDVVVVNPGTVMGPVIPPRLNASMVMLVRLLQGCAETYEDFFMGSVHFKDVALAHILVYENKSAAGRHLCVEAISHYGDFVAKVAELYPEYNVPK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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