SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40430 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumour suppressor protein Gltscr2 (InterPro:IPR011211), P60-like (InterPro:IPR011687). | chr2:16879466-16882365 REVERSE LENGTH=441 | SoyBase | E_val: 1.00E-75 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2823 | KOG | Cellular protein (glioma tumor suppressor candidate region gene 2) | JGI | ISS | |
| PTHR14211 | Panther | GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2 | JGI | ISS | |
| PTHR14211:SF10 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07767 | PFAM | Nop53 (60S ribosomal biogenesis) | JGI | ISS | |
| UniRef100_G7K7B9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glioma tumor suppressor candidate region gene 2 protein n=1 Tax=Medicago truncatula RepID=G7K7B9_MEDTR | SoyBase | E_val: 9.00E-179 | ISS |
| UniRef100_I1JHG4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHG4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g39540 not represented in the dataset |
Glyma02g39540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g230100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g39540.1 sequence type=CDS gene model=Glyma02g39540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGAAGGCAAAAGGGTCAAGGAAGGGTAAGAAGGCATGGAGAGCTAACATCAGCACCGAAGAGATCGAAGATTTCTTCGAGAAATCAACGAAGGACGCTCTTTCTGGTGGCTCTCTACAAGCCGTTTCTTCCGATTCTCTCTTCTATGAAGACAAGTCCAAAGATCTTGCTGTGAAGAAGAAGATCGAGAAACATAGGGAGAGGGTGCTCCGATGTGATAGCCTGCTACAGAAAAATCAGTTTGTTAAGCCAGTGCCATCTTCTATTCTGAAGAAGTGTTCTAAAAACCGTAATGTGGCCTCTAAATCCAATTTGAAAGTGGCCAATCAAGATGGTGATAAGGATGATTCTGCCATGTTTGATCTATGGGATGATAAAGGCAAGGATGACAAGAAGGTGAAAAAGGTAGCAAAGCCTACTCTTATCCCAGCAGTAGAGATTGATCCCCCAGGCTGCTCTTTCAATCCCTCATATGAAAGTCACCAGGATACATTGGCTTCTGCCGTTGCAGAAGTAATGCAAAAAATCTACAAAAATGAACTGGGCCCTGAACCCGTGCCTTTAACTGTTCCTGGAGAAGCTATCGCCGAAGAAGATATGTATTTTCTTGATGTGGACAATAGGAGTGACAACGATGAAAGTACTCCTGAAAATGAGGATGATGATGCATTGGAGAAAAAGCCTATTAAAACTAAGAGAGTTACTAGAGTTGAATTGAATAAGAGAGCTAGGCGGAAAGAACAACAGAGAAAAGAAGCAGAAGCTAAGAAGATAAAGGAATTGTCTAAGGAAATTGATAGCATACCAGAAATTGTTCAGGAAATTGAGCATGAAGACGAGGAAAAGAAGAAAAGACACCTTAGGCGTCAAGTTGCTAAACAGGAGATGTTAAAGACACGCCCACCACGCTTAGGAAAACACAAGTTTGAACCTGCACCTGTTCAAGTTTTATTAAGTGAAGAGATAACTGGATCCATTCGGAAGCTCAAGGGTTGCTGCACCCTTATAAAGGACCGATATAAAAGCATAGAAAAAAGAGGATTGATTGTTCCAGCAAAAAGGAGGAATTAG
>Glyma02g39540.1 sequence type=predicted peptide gene model=Glyma02g39540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKKAKGSRKGKKAWRANISTEEIEDFFEKSTKDALSGGSLQAVSSDSLFYEDKSKDLAVKKKIEKHRERVLRCDSLLQKNQFVKPVPSSILKKCSKNRNVASKSNLKVANQDGDKDDSAMFDLWDDKGKDDKKVKKVAKPTLIPAVEIDPPGCSFNPSYESHQDTLASAVAEVMQKIYKNELGPEPVPLTVPGEAIAEEDMYFLDVDNRSDNDESTPENEDDDALEKKPIKTKRVTRVELNKRARRKEQQRKEAEAKKIKELSKEIDSIPEIVQEIEHEDEEKKKRHLRRQVAKQEMLKTRPPRLGKHKFEPAPVQVLLSEEITGSIRKLKGCCTLIKDRYKSIEKRGLIVPAKRRN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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