SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51780 | AT | Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 4 | chr3:19207029-19208178 REVERSE LENGTH=269 | SoyBase | E_val: 1.00E-63 | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| KOG4361 | KOG | BCL2-associated athanogene-like proteins and related BAG family chaperone regulators | JGI | ISS | |
| PTHR12329 | Panther | BCL2-ASSOCIATED ATHANOGENE | JGI | ISS | |
| PTHR12329:SF9 | Panther | JGI | ISS | ||
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| PF02179 | PFAM | BAG domain | JGI | ISS | |
| UniRef100_B9RSC6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RSC6_RICCO | SoyBase | E_val: 1.00E-114 | ISS |
| UniRef100_I1JHF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHF6_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g39440 not represented in the dataset |
Glyma02g39440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g229300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g39440.2 sequence type=transcript gene model=Glyma02g39440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTAATGTTAGGTTGATAAAAGTTGTTACAATTTAGCTTTCATTAATTGGGGTATTTTAGAATAGGCATGTTGTTCAAATAAAAGCACTTTGCTAGATTCTTAAATTGAAGCCTAAGTTCTCTGTTTTGGCTTAATGGAAGGGCATCTAAAAATGGTGCTTACATCCGAGACTGGTCTTGAGCCTAAAGAGCAAAGGTTACTATTTAGAGGGAAAGAGAAAGAGGATGAGGAATGCTTGCATATGGTGGGAGTGAAAGACATGTCTAAGGTTATATTGCTAGAGGATCCAGCCAGCAAAGAGAGAAAGCTTGAGGAGATGCATAAGAGTGAAGATATCTCAAAGGCATGTGAAGCCATCTCCAAAGTCAGAACAGAAGTTGACAAGCTATATCAAAAGGTGGTTGCTTTGGAGACAACTGTTTGTGGTGGTGCTAAGGTTGAAGACAAAGAATTTGCTATCTTGACAGAATTGCTAATGGTTCAATTGCTTAAACTGGATTCCATTGCTGCTGAGGGAGAAGCCAAAGGGCAGAGAAGAGTTGAGGTTCGTCGTGTACAGAGTTATGTGGACACAATTGACAACCTGAAGGCAAGAAATTTTGCTGCATTTAGCAATGCTGGTAACAATGCAGTCCCTGTGATTTGGGAGGCCTTGGAATCCGGAGTTGGAAGCTTGAAGTCACCAACTTCATTTCCAACATCTACAGTGATTACTCAAAACTGGGAGCACTTTGAATAAATACAAGTTAATCCTTCCACTTTATTTATAGAAGAGGCTTCTATGATGACACTTGGTTTTTTGTAATGACAAGCTGTTTTTGGTAGGGAAGGGTTATGCTTGTACAAAATTAATACATGTACATGTTACTTCTCTATGTCCAAATAAACACTGATTTTGCCTTGTGTGTTCAATCAATCAATCAATAATAATAATAATAATAATAATAATAA
>Glyma02g39440.1 sequence type=CDS gene model=Glyma02g39440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAAAATCATCATCAGCTTCAAAAGGTGCAGCAGCCAATGATGGAGTTATTAAGGGAGGAAGCATAGATTGGGAGCTAAGACCTGGTGGCATGCTTGTTCAGAAGAGACAACCCCTTGATTCCTCTTCTAGTTCCATGATCAAAATCAAGGTCTCTCATGGTTCTTACCACCATGAGGTCACTGTTCCTGCACAATCCACTTTTGGGCATCTAAAAATGGTGCTTACATCCGAGACTGGTCTTGAGCCTAAAGAGCAAAGGTTACTATTTAGAGGGAAAGAGAAAGAGGATGAGGAATGCTTGCATATGGTGGGAGTGAAAGACATGTCTAAGGTTATATTGCTAGAGGATCCAGCCAGCAAAGAGAGAAAGCTTGAGGAGATGCATAAGAGTGAAGATATCTCAAAGGCATGTGAAGCCATCTCCAAAGTCAGAACAGAAGTTGACAAGCTATATCAAAAGGTGGTTGCTTTGGAGACAACTGTTTGTGGTGGTGCTAAGGTTGAAGACAAAGAATTTGCTATCTTGACAGAATTGCTAATGGTTCAATTGCTTAAACTGGATTCCATTGCTGCTGAGGGAGAAGCCAAAGGGCAGAGAAGAGTTGAGGTTCGTCGTGTACAGAGTTATGTGGACACAATTGACAACCTGAAGGCAAGAAATTTTGCTGCATTTAGCAATGCTGGTAACAATGCAGTCCCTGTGATTTGGGAGGCCTTGGAATCCGGAGTTGGAAGCTTGAAGTCACCAACTTCATTTCCAACATCTACAGTGATTACTCAAAACTGGGAGCACTTTGAATAA >Glyma02g39440.2 sequence type=CDS gene model=Glyma02g39440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGGGCATCTAAAAATGGTGCTTACATCCGAGACTGGTCTTGAGCCTAAAGAGCAAAGGTTACTATTTAGAGGGAAAGAGAAAGAGGATGAGGAATGCTTGCATATGGTGGGAGTGAAAGACATGTCTAAGGTTATATTGCTAGAGGATCCAGCCAGCAAAGAGAGAAAGCTTGAGGAGATGCATAAGAGTGAAGATATCTCAAAGGCATGTGAAGCCATCTCCAAAGTCAGAACAGAAGTTGACAAGCTATATCAAAAGGTGGTTGCTTTGGAGACAACTGTTTGTGGTGGTGCTAAGGTTGAAGACAAAGAATTTGCTATCTTGACAGAATTGCTAATGGTTCAATTGCTTAAACTGGATTCCATTGCTGCTGAGGGAGAAGCCAAAGGGCAGAGAAGAGTTGAGGTTCGTCGTGTACAGAGTTATGTGGACACAATTGACAACCTGAAGGCAAGAAATTTTGCTGCATTTAGCAATGCTGGTAACAATGCAGTCCCTGTGATTTGGGAGGCCTTGGAATCCGGAGTTGGAAGCTTGAAGTCACCAACTTCATTTCCAACATCTACAGTGATTACTCAAAACTGGGAGCACTTTGAATAA
>Glyma02g39440.1 sequence type=predicted peptide gene model=Glyma02g39440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKSSSASKGAAANDGVIKGGSIDWELRPGGMLVQKRQPLDSSSSSMIKIKVSHGSYHHEVTVPAQSTFGHLKMVLTSETGLEPKEQRLLFRGKEKEDEECLHMVGVKDMSKVILLEDPASKERKLEEMHKSEDISKACEAISKVRTEVDKLYQKVVALETTVCGGAKVEDKEFAILTELLMVQLLKLDSIAAEGEAKGQRRVEVRRVQSYVDTIDNLKARNFAAFSNAGNNAVPVIWEALESGVGSLKSPTSFPTSTVITQNWEHFE* >Glyma02g39440.2 sequence type=predicted peptide gene model=Glyma02g39440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGHLKMVLTSETGLEPKEQRLLFRGKEKEDEECLHMVGVKDMSKVILLEDPASKERKLEEMHKSEDISKACEAISKVRTEVDKLYQKVVALETTVCGGAKVEDKEFAILTELLMVQLLKLDSIAAEGEAKGQRRVEVRRVQSYVDTIDNLKARNFAAFSNAGNNAVPVIWEALESGVGSLKSPTSFPTSTVITQNWEHFE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
