SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30040 | AT | Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase kinase kinase 14 | chr2:12821747-12823138 FORWARD LENGTH=463 | SoyBase | E_val: 2.00E-118 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0198 | KOG | MEKK and related serine/threonine protein kinases | JGI | ISS | |
| PTHR24361 | Panther | MITOGEN-ACTIVATED KINASE KINASE KINASE | JGI | ISS | |
| PTHR24361:SF207 | Panther | SERINE/THREONINE-PROTEIN KINASE 24 | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7JZL6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7JZL6_MEDTR | SoyBase | E_val: 3.00E-148 | ISS |
| UniRef100_I1JHE8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JHE8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g39350 not represented in the dataset |
Glyma02g39350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g37500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g228300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g39350.2 sequence type=CDS gene model=Glyma02g39350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCGTGGGTGAGAGGCAAGTGCGTCGGTAACGGCGCGTTTGGGGTTGTGAACGTGGCGATTTCGAAAAGAGATAATCGCGTTTTCGCGGTGAAGTCCGTGGATTGTGGAAGGGGGCTTTCTGGTCATCAGGTGGAGGCGTTGGAGAACGAGATTGGGATTCTGAAGCGGGTGGCTTCGCCGCACGTGGTGGCTTATCTCGGAGACGATGTCACGTGCGAAGGAACGGCGTCGTTCAGGAATCTTCATCTGGAGTACATGCCAGGTGGCACCGTCGCTGACTTGGACCGCGCTGACGTGGACGAGCGGTTAGTGAGGCGCTTCGCGTGGTGCCTCGTGTCCGCGCTGCGTGACGTTCACGCGCAAGGCTTCGTCCACTGCGACGTGAAAGGGAGGAACGTGCTTCTCTCCGGCGACGGCGAAATCGTGAAGCTCGCCGATTTTGGCACGGCGGTGGAAATTGAATCCTCGCCGGCGGAGATGTTATTGTTGTCGCGGGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTTCGCCGGCAGAGGCAGGGGCCGGAGTCCGACGTGTGGTCGCTCGGATGCACGGTGATCGAGATTGTCACCGGGAAACCGGCGTGGGAGGATCGCGGCGTCGACACGCTGACTCGAATCGGTTACTCAGACGAGTTGCCGGAATTTCCAAAGCAGTTGTCGGAGCTAGGGAAGGATTTTCTCGAGAAGTGTCTCAGAAGAGAACATAGTGAACGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCCTACTACGCGGTTGCTGAATCGTCGCCTCGCTGCGTTCTCGACTGGGTTGACTCGGAGCTCAACTCCGAGTCAGATTGTAACGACCGTGATCATCAAGAAGACGTGTTTATAAAATTTACCAACAGCGAAGAAAAATCAGTTATTAAAAATAGAATTAGTAAATTTGCGACAGAGTCGAGGGTAAATTGGGAAACGCAGGGTTGGATAGTGGTGAGGGAAATTGAGTCCAACGGAAAACCAACGACAACGGGAACAGAAACAGAAATAGAGGAAGGAGCATGTACGTGTGAGTGTGATGGTGTTGGTTCGAGCAAAGAAGGGGTAAATTGGGAGTTTCACAATGTGGCGGGGACTGGTATGGAATATTCGGATTCTGTAGGGGTAAATCGGGGAATAGGAAAGTTGGGTGGGAGTAACACCGCTGGAGGGGGTGGTGGTTGGAGCTGTCGGTATGGGTGTGGGTGGGAAAAGTTGGGTAGGAATAGAGGAATATTCAGCATTTACAGCTTGTATTGTAAAAATTTCATGTTGTGTAATTTAATATTCTTAATGTATATCAATATATATTATGCTTTTGGATTATTGATGTTGTTTACCTTTTACTACACGTGA
>Glyma02g39350.2 sequence type=predicted peptide gene model=Glyma02g39350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSWVRGKCVGNGAFGVVNVAISKRDNRVFAVKSVDCGRGLSGHQVEALENEIGILKRVASPHVVAYLGDDVTCEGTASFRNLHLEYMPGGTVADLDRADVDERLVRRFAWCLVSALRDVHAQGFVHCDVKGRNVLLSGDGEIVKLADFGTAVEIESSPAEMLLLSRGSPMWMAPEVVRRQRQGPESDVWSLGCTVIEIVTGKPAWEDRGVDTLTRIGYSDELPEFPKQLSELGKDFLEKCLRREHSERWSCDQLLQHPFLLPYYAVAESSPRCVLDWVDSELNSESDCNDRDHQEDVFIKFTNSEEKSVIKNRISKFATESRVNWETQGWIVVREIESNGKPTTTGTETEIEEGACTCECDGVGSSKEGVNWEFHNVAGTGMEYSDSVGVNRGIGKLGGSNTAGGGGGWSCRYGCGWEKLGRNRGIFSIYSLYCKNFMLCNLIFLMYINIYYAFGLLMLFTFYYT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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