SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18410 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH | SoyBase | E_val: 9.00E-128 | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF10483 | PFAM | Histone acetylation protein 2 | JGI | ISS | |
| UniRef100_G7KE89 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dermal papilla-derived protein-like protein n=1 Tax=Medicago truncatula RepID=G7KE89_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JHC8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JHC8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g39180 not represented in the dataset |
Glyma02g39180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g37270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g226700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g39180.2 sequence type=CDS gene model=Glyma02g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTTTTTTAATTGGATCTCCTGTTATGGTGGCCGAAGTGTGAACCGCACGCAGGTATTCGCTTCTCTCTCAGGCCTGCACCTCCGTCTGTCTCCGCCGCCACGCCAGTTGTTCCCCGCCACGCAACCAAAGATGGCAGATTCGATTTGCAGAACACTGAGGGATGGAGCGTTAGAGGGAGAGCTTGTGCCTACTCTCACAATCAAGGACTCTCTCGCTTCACCTTTCGCCTTTCATGTATTCTCTCACATTCTACTTCAACTCTCATCACATGTCATAGCACAAAAATCTCAGTCACAGGGTATAGTAATTGTTGCACTTTCTCGGAGTCCATCGTCTTACACTTCTTTGTTAAAGATGAATGGAGTGGATTTTGCTTCTTCTAATAACAAATGGATTCACATTTTGGACTGTTATACTGATCCTCTTGGTTGGAAGGACAAGACAAGGAAAACTGTAAATGCTACGAATCCGTCTCAGCAAATTTCGCTTGCTACTAGTTCTTATAAATCCGTAAAGGATGTGGATAAGTTGTTTTCGGTAATTACTGAACTTGGCAGAGGATTGGTTGGAGAAAATAAAGCCCGCTTCTGTGTTGCCATAGACTCGCTAAGTGAACTGTTGAGACATGCATCTTTGCAATCAGTTGCAGGCCTTCTAAGCAACCTGCGTAGCCATGATCAAATTTCAAGTATTTTTGGACTATTGCATTCAGACCTTCATGAAGAGAAGGCTGTGGCTGTTCTTGAGTACATGTCTTCCATGGTGGCCAGTGTAGACCCATATCATCATTCTGCAGATGGTCAGAAAGAATGTTTAGAGAATTCCGTATCTGAGCAAAACTTTACCAAGGGAAAATTTAATGCCAGGTTCAAACGCAGAAATGGGCGAGTTAGAGTAACGTGTGAAGAATTTAATGTTGAGTCTGGAGGAATCAACTTCGTATCTGTTTCATCAGTAGACGGAACCGCCATTGCAGGCCTAGTGCCAAAGGTGCAATTCAATCTCCAGCTGTCAGAGAAAGAGCGAATTGATAGGTCAAATGTTGTGCTTCCTTTTGAACACCAGGGAAATGGCAAACCAATACAAATTTATGATGGTAGAAGATCCCTTGAAGAGAGCAACAGTGAGGCAAATCCCATTTCAAGTGGTAAAAAGGAGGATTCTGCCATGGGTGAGATTATATATTTTCGTGATTCAGATGATGAGATGCCAGATTCTGATGAGGACCCGGATGATGATTTAGATATATGA
>Glyma02g39180.2 sequence type=predicted peptide gene model=Glyma02g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMFFNWISCYGGRSVNRTQVFASLSGLHLRLSPPPRQLFPATQPKMADSICRTLRDGALEGELVPTLTIKDSLASPFAFHVFSHILLQLSSHVIAQKSQSQGIVIVALSRSPSSYTSLLKMNGVDFASSNNKWIHILDCYTDPLGWKDKTRKTVNATNPSQQISLATSSYKSVKDVDKLFSVITELGRGLVGENKARFCVAIDSLSELLRHASLQSVAGLLSNLRSHDQISSIFGLLHSDLHEEKAVAVLEYMSSMVASVDPYHHSADGQKECLENSVSEQNFTKGKFNARFKRRNGRVRVTCEEFNVESGGINFVSVSSVDGTAIAGLVPKVQFNLQLSEKERIDRSNVVLPFEHQGNGKPIQIYDGRRSLEESNSEANPISSGKKEDSAMGEIIYFRDSDDEMPDSDEDPDDDLDI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
