Glyma02g39090 - SoyBase

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Report for Sequence Feature Glyma02g39090

Feature Type:	gene_model
Chromosome:	Gm02
Start:	44374250
stop:	44376190
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g39090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G29730	AT	Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 71D1 \| chr2:12703652-12705055 FORWARD LENGTH=467	SoyBase	E_val: 2.33E-156	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0080043	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_C6ZJZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucoronosyl/UDP-glucosyl transferase family protein n=1 Tax=Glycine max RepID=C6ZJZ1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZJZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UDP-glucoronosyl/UDP-glucosyl transferase family protein n=1 Tax=Glycine max RepID=C6ZJZ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g39090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g39090 not represented in the dataset	Glyma02g39090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g39090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g226000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g39090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g39090

Limit To All Plant Sequences

>Glyma02g39090.2   sequence type=transcript   gene model=Glyma02g39090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGATGGATCCTCCGCAACAGTTGAATAATGCATGCCAGCGTGAATATAGAAGAAAGAAGAAAGAAAATGGGTGGTAGCAGTGAGAAGAACAAAAACGCAGAGCTGATCTTGATTCCCTCGCCAGGAATTGGGCACTTGACTTCATCTCTAGAATTTGCACAGCTTCTAATCAACCGTGACAACCGTCTTTCCGTCACAATCCTCTGCATCAAGTTCCCTTTCACACCCTTTGCAGACTCTTACATCAGAACAGCTTTAGCCTCACAACCCAAAATCAAGCTCATTGATCTCCCTCTAGTGGAGCCACCACCACGGGAGCTAGCTCTCAACTCCCCTGAACACTACATATGGACCTTCATGGAAAGCCTCAAACCCCACGTCAGAGCCATCATGCAAAACATTTTATCACACCCAGTTGTTGGTTTAGTCCTTGATATCTTTACTATGTCTATGGTTGATGTGGGAGATGAACTTGGCATACCCTCTTACATGTTCATGACTTCAAATGTTGCATTCACAGCTTTCATGCTTTTCCTCCTCAGCCGTCGGATGGAGGATGTGTTCAGTGATTCTGATCCTGACTTGTCGATTCCCGGGTTCCCGGATCCGGTTCCTCCGAGTGTTCTGCCTGATGCTGCTTTCAACAAAGACGGTGGATACGCCACGTATTACAAGCTTGCTAAGAGGTTCATGGATACCAAAGGGATCATTGTCAACTCTTTTTCAGAGCTGGAGCAGTATGCTATTGATGCATTGTCTGAAGAAGGTCAAAGTCGAACCCCTCCTGTCTACGCTGTTGGCCCTTTGATTGATCTCAAGGGTCAGCCTAACCCTAATTTGGATCAAGCTCAGCATGACAAAGTGTTGAAATGGCTGGATGAGCAGCCAGGTTCTTCTGTTGTTTTTCTTTGTTTTGGGAGCATGGGAGGGTTTGGTCCTTCTCAAACAAGGGAAATAGCACTAGCACTTCAGGGTAGTGGGCTAAGGTTCTTGTGGGCTATGCGTTCTCCCCCAACCTCAGACAATGCAGACAGAACCTTACCAGAAGGTTTCTTGGAATGGATGGAGGAAGGTAAAGGAATGGTATGTGGATGGGCACCCCAAGTGGAGGTTTTGGCACACAAAGCCATTGGGGGGTTTGTGTCTCATTGTGGATGGAACTCTATTTTGGAAAGCTTGTGGTTTGGGGTACCAATATTGACATGGCCTATCTATGCAGAACAACAGCTGAATGCTTTTTGGATGGTGAGGGGATACGAATTGGCAGTGGAGCTTAAAGTGGATTATAGAAGGGGTAGTGATCTTGTGATGGCAGAGGAGATAGAGAAAGGCTTGAAACAATTGATGGATGGAGATAATGTGGTGCACAAGAATGTGAAGGAGATGAAAGAGAAGGCTAGGAATGCTGTCCTTACTGGTGGGTCTTCTTACATTGCTGTTGGGAAACTAATTGATAATATGTTGGGAAGCAACTGATAACATAGTTGTTGTGTTTTATTAGATGGAGTTGCTCCTTTCCTGTTAGATGAATAATCAAATGGTTGCAGTTTGTGTATGTTAGATGGAGTTGCTCCTTTCCTGTTAGATGAATAATCAAATGGTTGCAGTTTGTGTATGACGAATTTGCTTGAGCAATTATGAATATTCTTCTGTTCTGCGTTTTCTTTGGGTGGTTTATATTAAATTGTTCGTTCAAATCTGAACTGGGGAAATAGAATGGATTAACCTCAATCAATACAACGAC

Coding sequences of Glyma02g39090

Limit To All Plant Sequences

>Glyma02g39090.1   sequence type=CDS   gene model=Glyma02g39090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTAGCAGTGAGAAGAACAAAAACGCAGAGCTGATCTTGATTCCCTCGCCAGGAATTGGGCACTTGACTTCATCTCTAGAATTTGCACAGCTTCTAATCAACCGTGACAACCGTCTTTCCGTCACAATCCTCTGCATCAAGTTCCCTTTCACACCCTTTGCAGACTCTTACATCAGAACAGCTTTAGCCTCACAACCCAAAATCAAGCTCATTGATCTCCCTCTAGTGGAGCCACCACCACGGGAGCTAGCTCTCAACTCCCCTGAACACTACATATGGACCTTCATGGAAAGCCTCAAACCCCACGTCAGAGCCATCATGCAAAACATTTTATCACACCCAGTTGTTGGTTTAGTCCTTGATATCTTTACTATGTCTATGGTTGATGTGGGAGATGAACTTGGCATACCCTCTTACATGTTCATGACTTCAAATGTTGCATTCACAGCTTTCATGCTTTTCCTCCTCAGCCGTCGGATGGAGGATGTGTTCAGTGATTCTGATCCTGACTTGTCGATTCCCGGGTTCCCGGATCCGGTTCCTCCGAGTGTTCTGCCTGATGCTGCTTTCAACAAAGACGGTGGATACGCCACGTATTACAAGCTTGCTAAGAGGTTCATGGATACCAAAGGGATCATTGTCAACTCTTTTTCAGAGCTGGAGCAGTATGCTATTGATGCATTGTCTGAAGAAGGTCAAAGTCGAACCCCTCCTGTCTACGCTGTTGGCCCTTTGATTGATCTCAAGGGTCAGCCTAACCCTAATTTGGATCAAGCTCAGCATGACAAAGTGTTGAAATGGCTGGATGAGCAGCCAGGTTCTTCTGTTGTTTTTCTTTGTTTTGGGAGCATGGGAGGGTTTGGTCCTTCTCAAACAAGGGAAATAGCACTAGCACTTCAGGGTAGTGGGCTAAGGTTCTTGTGGGCTATGCGTTCTCCCCCAACCTCAGACAATGCAGACAGAACCTTACCAGAAGGTTTCTTGGAATGGATGGAGGAAGGTAAAGGAATGGTATGTGGATGGGCACCCCAAGTGGAGGTTTTGGCACACAAAGCCATTGGGGGGTTTGTGTCTCATTGTGGATGGAACTCTATTTTGGAAAGCTTGTGGTTTGGGGTACCAATATTGACATGGCCTATCTATGCAGAACAACAGCTGAATGCTTTTTGGATGGTGAGGGGATACGAATTGGCAGTGGAGCTTAAAGTGGATTATAGAAGGGGTAGTGATCTTGTGATGGCAGAGGAGATAGAGAAAGGCTTGAAACAATTGATGGATGGAGATAATGTGGTGCACAAGAATGTGAAGGAGATGAAAGAGAAGGCTAGGAATGCTGTCCTTACTGGTGGGTCTTCTTACATTGCTGTTGGGAAACTAATTGATAATATGTTGGGAAGCAACTGA

>Glyma02g39090.2   sequence type=CDS   gene model=Glyma02g39090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGCCAGCGTGAATATAGAAGAAAGAAGAAAGAAAATGGGTGGTAGCAGTGAGAAGAACAAAAACGCAGAGCTGATCTTGATTCCCTCGCCAGGAATTGGGCACTTGACTTCATCTCTAGAATTTGCACAGCTTCTAATCAACCGTGACAACCGTCTTTCCGTCACAATCCTCTGCATCAAGTTCCCTTTCACACCCTTTGCAGACTCTTACATCAGAACAGCTTTAGCCTCACAACCCAAAATCAAGCTCATTGATCTCCCTCTAGTGGAGCCACCACCACGGGAGCTAGCTCTCAACTCCCCTGAACACTACATATGGACCTTCATGGAAAGCCTCAAACCCCACGTCAGAGCCATCATGCAAAACATTTTATCACACCCAGTTGTTGGTTTAGTCCTTGATATCTTTACTATGTCTATGGTTGATGTGGGAGATGAACTTGGCATACCCTCTTACATGTTCATGACTTCAAATGTTGCATTCACAGCTTTCATGCTTTTCCTCCTCAGCCGTCGGATGGAGGATGTGTTCAGTGATTCTGATCCTGACTTGTCGATTCCCGGGTTCCCGGATCCGGTTCCTCCGAGTGTTCTGCCTGATGCTGCTTTCAACAAAGACGGTGGATACGCCACGTATTACAAGCTTGCTAAGAGGTTCATGGATACCAAAGGGATCATTGTCAACTCTTTTTCAGAGCTGGAGCAGTATGCTATTGATGCATTGTCTGAAGAAGGTCAAAGTCGAACCCCTCCTGTCTACGCTGTTGGCCCTTTGATTGATCTCAAGGGTCAGCCTAACCCTAATTTGGATCAAGCTCAGCATGACAAAGTGTTGAAATGGCTGGATGAGCAGCCAGGTTCTTCTGTTGTTTTTCTTTGTTTTGGGAGCATGGGAGGGTTTGGTCCTTCTCAAACAAGGGAAATAGCACTAGCACTTCAGGGTAGTGGGCTAAGGTTCTTGTGGGCTATGCGTTCTCCCCCAACCTCAGACAATGCAGACAGAACCTTACCAGAAGGTTTCTTGGAATGGATGGAGGAAGGTAAAGGAATGGTATGTGGATGGGCACCCCAAGTGGAGGTTTTGGCACACAAAGCCATTGGGGGGTTTGTGTCTCATTGTGGATGGAACTCTATTTTGGAAAGCTTGTGGTTTGGGGTACCAATATTGACATGGCCTATCTATGCAGAACAACAGCTGAATGCTTTTTGGATGGTGAGGGGATACGAATTGGCAGTGGAGCTTAAAGTGGATTATAGAAGGGGTAGTGATCTTGTGATGGCAGAGGAGATAGAGAAAGGCTTGAAACAATTGATGGATGGAGATAATGTGGTGCACAAGAATGTGAAGGAGATGAAAGAGAAGGCTAGGAATGCTGTCCTTACTGGTGGGTCTTCTTACATTGCTGTTGGGAAACTAATTGATAATATGTTGGGAAGCAACTGA

Predicted protein sequences of Glyma02g39090

Limit To All Plant Sequences

>Glyma02g39090.1   sequence type=predicted peptide   gene model=Glyma02g39090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSEKNKNAELILIPSPGIGHLTSSLEFAQLLINRDNRLSVTILCIKFPFTPFADSYIRTALASQPKIKLIDLPLVEPPPRELALNSPEHYIWTFMESLKPHVRAIMQNILSHPVVGLVLDIFTMSMVDVGDELGIPSYMFMTSNVAFTAFMLFLLSRRMEDVFSDSDPDLSIPGFPDPVPPSVLPDAAFNKDGGYATYYKLAKRFMDTKGIIVNSFSELEQYAIDALSEEGQSRTPPVYAVGPLIDLKGQPNPNLDQAQHDKVLKWLDEQPGSSVVFLCFGSMGGFGPSQTREIALALQGSGLRFLWAMRSPPTSDNADRTLPEGFLEWMEEGKGMVCGWAPQVEVLAHKAIGGFVSHCGWNSILESLWFGVPILTWPIYAEQQLNAFWMVRGYELAVELKVDYRRGSDLVMAEEIEKGLKQLMDGDNVVHKNVKEMKEKARNAVLTGGSSYIAVGKLIDNMLGSN*

>Glyma02g39090.2   sequence type=predicted peptide   gene model=Glyma02g39090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHASVNIEERRKKMGGSSEKNKNAELILIPSPGIGHLTSSLEFAQLLINRDNRLSVTILCIKFPFTPFADSYIRTALASQPKIKLIDLPLVEPPPRELALNSPEHYIWTFMESLKPHVRAIMQNILSHPVVGLVLDIFTMSMVDVGDELGIPSYMFMTSNVAFTAFMLFLLSRRMEDVFSDSDPDLSIPGFPDPVPPSVLPDAAFNKDGGYATYYKLAKRFMDTKGIIVNSFSELEQYAIDALSEEGQSRTPPVYAVGPLIDLKGQPNPNLDQAQHDKVLKWLDEQPGSSVVFLCFGSMGGFGPSQTREIALALQGSGLRFLWAMRSPPTSDNADRTLPEGFLEWMEEGKGMVCGWAPQVEVLAHKAIGGFVSHCGWNSILESLWFGVPILTWPIYAEQQLNAFWMVRGYELAVELKVDYRRGSDLVMAEEIEKGLKQLMDGDNVVHKNVKEMKEKARNAVLTGGSSYIAVGKLIDNMLGSN*

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