SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07820 | AT | Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391 | SoyBase | E_val: 2.00E-74 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0004650 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity | SoyBase | N/A | ISS |
| PF00295 | PFAM | Glycosyl hydrolases family 28 | JGI | ISS | |
| UniRef100_O82019 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Medicago sativa RepID=O82019_MEDSA | SoyBase | E_val: 2.00E-97 | ISS |
| UniRef100_UPI0002337627 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337627 related cluster n=1 Tax=unknown RepID=UPI0002337627 | SoyBase | E_val: 0 | ISS |
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Glyma02g38980 not represented in the dataset |
Glyma02g38980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g38980.2 sequence type=CDS gene model=Glyma02g38980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTTTCATGGAGTATGACCACATTAGCTTTGCTACTATTGCTAGCTTCATATGTCAAAGTTCAAGCTAACCTTTTTGATATAAGAAAATATGGTGTAGTACCTAATTTAGACATAACCATGGCTTTGCAAAAAGCTTGGACACATGCATGTGCATCAATGACTACAAGCAAAATTGTGATTCCTAACGGTAAATACAAGTTGAGACAAATAGACTTTATGGGACCTTGCAAGGCTCCTATTGAGGTCCAGAATTTTGGTTTTGGCTTTGTCAATAATTTAATAATTATGGACATAACTTTAAAGGATAGCAAATATTTTCATGTGAATATTTTTGGGTGCAAGAACATTACATTTACAAACTTCAGAGTTAGCTCAACTACATATAATCCCAATACTGATAGAATTCACATTGGAAAATTAACTCAAGTGAAGATTACTAACTCACAAATTGGCACTGGCGATGATTGCATATCACTGGGTGATGGGAGCAAAGAAGTAACTATCCTAAATGTAACATGTGGGCCTGAACATGGTATTAGTGTTGGAAGCTTAGAAAAATATTCAAATGAAGATTCTGTAGAGGATCTTATTGTCAAGAATTGTACACTAAAAAACACAAACAATGGTCTAAGGATCAAAACTTGGCCTATACTCCCATGGAATCAATGCTCAAAACAGAGTCCATCAAAAATAAAGATAAGCAAAGTCACTTTCAAAAATATTAGAGGAACTTCAGCAACTCAAGAAAGGATAACTCTTATTTGTAGCAGTGGTGTTCCATGTGAAACTGTGGAGCTCAGTGACATAAATCTAAGATTTAATGATATCATTTTAGCAACTGCGAAATGTGCAAATGTCAAGCCTAATTTTGAAGGGAAAGCACCAATATGTGCAACTTAG
>Glyma02g38980.2 sequence type=predicted peptide gene model=Glyma02g38980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFSWSMTTLALLLLLASYVKVQANLFDIRKYGVVPNLDITMALQKAWTHACASMTTSKIVIPNGKYKLRQIDFMGPCKAPIEVQNFGFGFVNNLIIMDITLKDSKYFHVNIFGCKNITFTNFRVSSTTYNPNTDRIHIGKLTQVKITNSQIGTGDDCISLGDGSKEVTILNVTCGPEHGISVGSLEKYSNEDSVEDLIVKNCTLKNTNNGLRIKTWPILPWNQCSKQSPSKIKISKVTFKNIRGTSATQERITLICSSGVPCETVELSDINLRFNDIILATAKCANVKPNFEGKAPICAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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