Glyma02g38800 - SoyBase

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Report for Sequence Feature Glyma02g38800

Feature Type:	gene_model
Chromosome:	Gm02
Start:	44152136
stop:	44155576
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g38800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02990	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein \| chr4:1322158-1323783 FORWARD LENGTH=541	SoyBase	E_val: 0	ISS
GO:0008380	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0032502	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental process	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0042794	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA transcription from plastid promoter	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1267	KOG	Mitochondrial transcription termination factor, mTERF	JGI		ISS
PTHR13068	Panther	CGI-12 PROTEIN-RELATED	JGI		ISS
PTHR13068:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02536	PFAM	mTERF	JGI		ISS
UniRef100_G7K677	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mTERF family protein n=1 Tax=Medicago truncatula RepID=G7K677_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JH93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JH93_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g38800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g38800 not represented in the dataset	Glyma02g38800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g38800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g223000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g38800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g38800

Limit To All Plant Sequences

>Glyma02g38800.2   sequence type=transcript   gene model=Glyma02g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGTGTTTACTTTCAAAAAATCCATATCTCATTGTTCAAGTTACTTTGAGTGAGCAACCCTCACAGCGTCACCCAGTCGGCATTGTGCAGGAGCATTTCTCTCCCGTCGGAGCAACTTCAGAGATTCAATGCTAGTTGTTTGGACTTTGAAAATATGAAAGTAATAAGCTTTTCCGGTGGCATAACAAAACCCTGTTTTTTTATTGCCCAAACAGAAATGCCTATTCTAACATTTGCTCATTGTAAGCTGAGTGCTACCCTAGCTCTTAGGAGGATGGGGTCCATTACGAGACTTCAATATTCTGTTGCTGATAGGACATTCACTTCTGGTTCCGTGGATTTGCCGGCTTCCAAAACGGACTCTGGTCGAGTGAATCGGAGGCGGGGAGGCGGCTCATCCTCGGTATATAGCCGTCCTAGTTTATCAGAAATGAAGAAGGAGAAGGCAGCAATAAGGGAAAAGGTTTATGAGTTCTTGAGGGCAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTCCCTGTGACTGTTGATGTTATGAGGGAGCGCGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGACATCAACAACTATCCGCTTGTTCTTGGCTGCAGTGTCAAGAAGAACATGATTCCTGTGCTTGATTACCTTGGAAAATTGGGAGTGAGGAAATCCTCGATCACTCAATTCTTGCAGAGATACCCACAAGTGCTCCATGCTAGTGTGGTTGTGGATCTTATGCCGGTGGTCAATTATCTTAAGGGGATGGATATCAAGTTCGATGATGTTCCTCGTGTTCTTGAGAGGTACCCTGAAGTTCTCGGATTCAAACTTGAGGGAACTATGAGCACATCCGTTGCTTATTTGATTGGAATTGGAGTAGGAAGAAGAGAAATTGGAGGTGTCTTAACTAGATACCCAGAGATTTTGGGGATGCGAGTTGGTAGAGTCATCAAGCCTTTTGTGGAATATCTGGAAAGCTTGGGAATTCCAAGGTTAGCTATTGCTAGACTGATAGAGCAACGGCCTTATATTCTTGGATTTGGGCTGGGTGAGAAGGTGAAGCCAAATGTTAAATACCTTGAAGAGTATAATGTTAGGCGAACATCACTTCCGTCTATAATTGCTCAATATCCTGACATCATTGGAACTGACCTAAATCAAAAGCTTGAAAAACAGAGAAGTTTACTCAATTCTGTACTTGATTTGGATCCAGAGGACTTTGGCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAACCTCAGCAGTGGACCTATGCTGAAACATGTTGATTTTCTTAAGAATTGTGGGTTTTCCTTGCCACAAATGAGGCAGATGGTTGTTGGATGCCCTCAATTACTTGCTTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGGTTATGAAAAGGCCTTTGGAAGACTTAGTTACTTTCCCTGCATTCTTCACTTACGGTTTGGAGTCAACTATAAAACCTAGGCATAAGATGGTTGTCAAGAAAGGGTTGAAGTGTTCTCTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATTCACTGACGCAACCAAGAAGTGATGAATCAGATTTTGATTATGAAGACAGCGATGAAGATGACGAGTAGAATGATTAAGTTACTCCAATAACTAGTTTATCTGGGAAAATTTTGATATTCTGTTGGATGATCTTTATGCTGATATTTACAATGATGTACCATTGGAAAGGTAATTTATTATGCGAGTACACGTGAAGTATTTTTAAGTGTTTGTATACTAATTCTTATGTTTGTTTATGTGATATGATATTGAGTTCTTGTATTCCAATTACCTCCTACTTATTTCTATTTCACAATTGTACAACAGAGCTACTGATCTCCTCATCTATTACAATGTTTGTAGTACAAAAGTTCTGTGGAATTGTGAACGAGACATTAGTTGACTCAATGGATAAGCTTTGACAATATGAGAGTGATTATGTTTTTTTTAGTAATTACATTTTTGGATTATTATTATTATTAGCATTATAATAAAAAC

Coding sequences of Glyma02g38800

Limit To All Plant Sequences

>Glyma02g38800.1   sequence type=CDS   gene model=Glyma02g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGTAATAAGCTTTTCCGGTGGCATAACAAAACCCTGTTTTTTTATTGCCCAAACAGAAATGCCTATTCTAACATTTGCTCATTGTAAGCTGAGTGCTACCCTAGCTCTTAGGAGGATGGGGTCCATTACGAGACTTCAATATTCTGTTGCTGATAGGACATTCACTTCTGGTTCCGTGGATTTGCCGGCTTCCAAAACGGACTCTGGTCGAGTGAATCGGAGGCGGGGAGGCGGCTCATCCTCGGTATATAGCCGTCCTAGTTTATCAGAAATGAAGAAGGAGAAGGCAGCAATAAGGGAAAAGGTTTATGAGTTCTTGAGGGCAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTCCCTGTGACTGTTGATGTTATGAGGGAGCGCGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGACATCAACAACTATCCGCTTGTTCTTGGCTGCAGTGTCAAGAAGAACATGATTCCTGTGCTTGATTACCTTGGAAAATTGGGAGTGAGGAAATCCTCGATCACTCAATTCTTGCAGAGATACCCACAAGTGCTCCATGCTAGTGTGGTTGTGGATCTTATGCCGGTGGTCAATTATCTTAAGGGGATGGATATCAAGTTCGATGATGTTCCTCGTGTTCTTGAGAGGTACCCTGAAGTTCTCGGATTCAAACTTGAGGGAACTATGAGCACATCCGTTGCTTATTTGATTGGAATTGGAGTAGGAAGAAGAGAAATTGGAGGTGTCTTAACTAGATACCCAGAGATTTTGGGGATGCGAGTTGGTAGAGTCATCAAGCCTTTTGTGGAATATCTGGAAAGCTTGGGAATTCCAAGGTTAGCTATTGCTAGACTGATAGAGCAACGGCCTTATATTCTTGGATTTGGGCTGGGTGAGAAGGTGAAGCCAAATGTTAAATACCTTGAAGAGTATAATGTTAGGCGAACATCACTTCCGTCTATAATTGCTCAATATCCTGACATCATTGGAACTGACCTAAATCAAAAGCTTGAAAAACAGAGAAGTTTACTCAATTCTGTACTTGATTTGGATCCAGAGGACTTTGGCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAACCTCAGCAGTGGACCTATGCTGAAACATGTTGATTTTCTTAAGAATTGTGGGTTTTCCTTGCCACAAATGAGGCAGATGGTTGTTGGATGCCCTCAATTACTTGCTTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGGTTATGAAAAGGCCTTTGGAAGACTTAGTTACTTTCCCTGCATTCTTCACTTACGGTTTGGAGTCAACTATAAAACCTAGGCATAAGATGGTTGTCAAGAAAGGGTTGAAGTGTTCTCTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATTCACTGACGCAACCAAGAAGTGATGAATCAGATTTTGATTATGAAGACAGCGATGAAGATGACGAGTAG

>Glyma02g38800.2   sequence type=CDS   gene model=Glyma02g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGTAATAAGCTTTTCCGGTGGCATAACAAAACCCTGTTTTTTTATTGCCCAAACAGAAATGCCTATTCTAACATTTGCTCATTGTAAGCTGAGTGCTACCCTAGCTCTTAGGAGGATGGGGTCCATTACGAGACTTCAATATTCTGTTGCTGATAGGACATTCACTTCTGGTTCCGTGGATTTGCCGGCTTCCAAAACGGACTCTGGTCGAGTGAATCGGAGGCGGGGAGGCGGCTCATCCTCGGTATATAGCCGTCCTAGTTTATCAGAAATGAAGAAGGAGAAGGCAGCAATAAGGGAAAAGGTTTATGAGTTCTTGAGGGCAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTCCCTGTGACTGTTGATGTTATGAGGGAGCGCGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGACATCAACAACTATCCGCTTGTTCTTGGCTGCAGTGTCAAGAAGAACATGATTCCTGTGCTTGATTACCTTGGAAAATTGGGAGTGAGGAAATCCTCGATCACTCAATTCTTGCAGAGATACCCACAAGTGCTCCATGCTAGTGTGGTTGTGGATCTTATGCCGGTGGTCAATTATCTTAAGGGGATGGATATCAAGTTCGATGATGTTCCTCGTGTTCTTGAGAGGTACCCTGAAGTTCTCGGATTCAAACTTGAGGGAACTATGAGCACATCCGTTGCTTATTTGATTGGAATTGGAGTAGGAAGAAGAGAAATTGGAGGTGTCTTAACTAGATACCCAGAGATTTTGGGGATGCGAGTTGGTAGAGTCATCAAGCCTTTTGTGGAATATCTGGAAAGCTTGGGAATTCCAAGGTTAGCTATTGCTAGACTGATAGAGCAACGGCCTTATATTCTTGGATTTGGGCTGGGTGAGAAGGTGAAGCCAAATGTTAAATACCTTGAAGAGTATAATGTTAGGCGAACATCACTTCCGTCTATAATTGCTCAATATCCTGACATCATTGGAACTGACCTAAATCAAAAGCTTGAAAAACAGAGAAGTTTACTCAATTCTGTACTTGATTTGGATCCAGAGGACTTTGGCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAACCTCAGCAGTGGACCTATGCTGAAACATGTTGATTTTCTTAAGAATTGTGGGTTTTCCTTGCCACAAATGAGGCAGATGGTTGTTGGATGCCCTCAATTACTTGCTTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGGTTATGAAAAGGCCTTTGGAAGACTTAGTTACTTTCCCTGCATTCTTCACTTACGGTTTGGAGTCAACTATAAAACCTAGGCATAAGATGGTTGTCAAGAAAGGGTTGAAGTGTTCTCTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATTCACTGACGCAACCAAGAAGTGATGAATCAGATTTTGATTATGAAGACAGCGATGAAGATGACGAGTAG

Predicted protein sequences of Glyma02g38800

Limit To All Plant Sequences

>Glyma02g38800.1   sequence type=predicted peptide   gene model=Glyma02g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVISFSGGITKPCFFIAQTEMPILTFAHCKLSATLALRRMGSITRLQYSVADRTFTSGSVDLPASKTDSGRVNRRRGGGSSSVYSRPSLSEMKKEKAAIREKVYEFLRAIGIVPDELDGLELPVTVDVMRERVDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSITQFLQRYPQVLHASVVVDLMPVVNYLKGMDIKFDDVPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIEQRPYILGFGLGEKVKPNVKYLEEYNVRRTSLPSIIAQYPDIIGTDLNQKLEKQRSLLNSVLDLDPEDFGRVVEKMPQVVNLSSGPMLKHVDFLKNCGFSLPQMRQMVVGCPQLLALNIDIMKLSFDYFQMVMKRPLEDLVTFPAFFTYGLESTIKPRHKMVVKKGLKCSLSWMLNCSNEKFEQRMDYDTIDMEEMEMEPSFDMNSLTQPRSDESDFDYEDSDEDDE*

>Glyma02g38800.2   sequence type=predicted peptide   gene model=Glyma02g38800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVISFSGGITKPCFFIAQTEMPILTFAHCKLSATLALRRMGSITRLQYSVADRTFTSGSVDLPASKTDSGRVNRRRGGGSSSVYSRPSLSEMKKEKAAIREKVYEFLRAIGIVPDELDGLELPVTVDVMRERVDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSITQFLQRYPQVLHASVVVDLMPVVNYLKGMDIKFDDVPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGVLTRYPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIEQRPYILGFGLGEKVKPNVKYLEEYNVRRTSLPSIIAQYPDIIGTDLNQKLEKQRSLLNSVLDLDPEDFGRVVEKMPQVVNLSSGPMLKHVDFLKNCGFSLPQMRQMVVGCPQLLALNIDIMKLSFDYFQMVMKRPLEDLVTFPAFFTYGLESTIKPRHKMVVKKGLKCSLSWMLNCSNEKFEQRMDYDTIDMEEMEMEPSFDMNSLTQPRSDESDFDYEDSDEDDE*

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