SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24580 | AT | Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:8410394-8412087 REVERSE LENGTH=319 | SoyBase | E_val: 1.00E-99 | ISS |
| GO:0006825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: copper ion transport | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG1603 | KOG | Copper chaperone | JGI | ISS | |
| PTHR22814 | Panther | COPPER TRANSPORT PROTEIN ATOX1-RELATED | JGI | ISS | |
| PTHR22814:SF57 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00403 | PFAM | Heavy-metal-associated domain | JGI | ISS | |
| UniRef100_B9S5N9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Copper ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9S5N9_RICCO | SoyBase | E_val: 3.00E-102 | ISS |
| UniRef100_I1JH87 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JH87_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g38750 not represented in the dataset |
Glyma02g38750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g36860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g222600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g38750.4 sequence type=transcript gene model=Glyma02g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCATACTAAAAAATTAGTGAAAATTCAAACCCTGAAAGACACAAGTCACTGTCATTTTTCCACTCTCTTTCTATTTTCTTTTTTTCTCCCTCTTCCCAACTTGACCTAACTATTAATTCCTCCTCCCACCCTATAAATCTGCTGAGCCTGCTCCACTGATTCACCCCTTCTACCTTCACAACCTTGAAGATTGAAAAGAATTCTGAAAAAAAAAATTAAACTAAGAGGTTCCCTTTCGCAGTTAGTGGCACTGCATGTGGTAAGGAATCACTCAGTTTAACTTTATATATGCATATCACTCCTCAGTCACCTATCATATACCCCTTCTCCTTCCCTCCTTATAACATCACTGATTTCTCAACACTTGTTAAACCCTCTCCATCTTTTGCATGTCTAAGAACTTTTTTTCCAAATTCAGAATAACAATTTGACATTTCATCAGTCTCGATTCATAGGACAAATGGGTGAGGAAGCAAAACAGGAGCAAGTACAACCAGTGGCTGAAGCCAAGCCTGAGGAGAAGAAAGAAGAGAAGGCAGAGGAAAAGCCAGCAGAGGAAAAGAAGGAAGAAAAACCAGAAGAAAAGACAGAAGATGAGAAGAAGGAAGAGCCTAAACCACCTTCACCATGTGTGCTGTTTGTGGACTTGCATTGTGAGGGATGTGCCAAGAAAATTGAGAGATACATTATGAAAATGAGAGGAGTTGAAGGAGTGGTAATTGACATGGCTAAAAATGAAGTGACCATAAAGGGTATAGTGGAGCCTCAAGCAATCTGCAACACAATCACAAAGAAAACAAAGAGAAGAGCAAGTGTTATATCTCCATTGCCTGAAGCAGAAGGAGAACCTATACCAGAAGTTGTCAATTCTCAGGTTAGTGGACCAGTTACTGTGGAACTGAATGTAAACATGCACTGTGAGGCCTGTGCTGAGCAACTCAAGAGGAAGATACTACAAATGAGAGGAGTTCAAACAGCAATGACAGAGTTTAGCACAGGGAAGGTTCTTGTGACAGGAATCATGGATGCAAACAAACTAGTAGATTATGTATATAGACGCACCAAAAAGCAAGCTAAGATAGTTCCTCAGCCAGAACCAGAACCAGAAAAGAAAGAAGAGAAACCTGCAGAAGAAGAGACTAAACCTGAAGAGGAGAAGCCACCAGAGGAAGCAAAGAAAGAAGAGGGTGGTGAGAACAAAGAAGAAAAGGGTGGTGAAGAAAGCAAAGAAGAAGCCAAAAAAGAAGAGAATAATGTGGTGGTGGTGCCTTACAATAACATTGATGATGAAGGCTTAAAGAGGATGATGTACTATTATCAGTACCCTCCACTCTCTGTCATTGAAAGAATACCACCTCCACAACTCTTCAGTGATGAAAATCCTAATGCATGCTGCATTGTATAAACGATCATCATAGGAATGAGAAAAAGGTTTCAAAGTTGTTTGTAAGCACCACCAATATGGGAAATTTTTTTATTGAGTTGGGCTGGTGGAATGGGAGAAGGTGTCAAATGAAATGGCATGGAATCATATTGATAACAAGCTGATTGATGATATATCGTTCTGTCTTATTTATGTATGTACGATATATTATTATTACAAATAGTAATACATCATCATTGTGCACATGCTTGTGAAATATATGAGTATCTTCAAGTTTTTTTTTTC
>Glyma02g38750.3 sequence type=CDS gene model=Glyma02g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGGAAGCAAAACAGGAGCAAGTACAACCAGTGGCTGAAGCCAAGCCTGAGGAGAAGAAAGAAGAGAAGGCAGAGGAAAAGCCAGCAGAGGAAAAGAAGGAAGAAAAACCAGAAGAAAAGACAGAAGATGAGAAGAAGGAAGAGCCTAAACCACCTTCACCATGTGTGCTGTTTGTGGACTTGCATTGTGAGGGATGTGCCAAGAAAATTGAGAGATACATTATGAAAATGAGAGGAGTTGAAGGAGTGGTAATTGACATGGCTAAAAATGAAGTGACCATAAAGGGTATAGTGGAGCCTCAAGCAATCTGCAACACAATCACAAAGAAAACAAAGAGAAGAGCAAGTGTTATATCTCCATTGCCTGAAGCAGAAGGAGAACCTATACCAGAAGTTGTCAATTCTCAGGTTAGTGGACCAGTTACTGTGGAACTGAATGTAAACATGCACTGTGAGGCCTGTGCTGAGCAACTCAAGAGGAAGATACTACAAATGAGAGGAGTTCAAACAGCAATGACAGAGTTTAGCACAGGGAAGGTTCTTGTGACAGGAATCATGGATGCAAACAAACTAGTAGATTATGTATATAGACGCACCAAAAAGCAAGCTAAGATAGTTCCTCAGCCAGAACCAGAACCAGAAAAGAAAGAAGAGAAACCTGCAGAAGAAGAGACTAAACCTGAAGAGGAGAAGCCACCAGAGGAAGCAAAGAAAGAAGAGGGTGGTGAGAACAAAGAAGAAAAGGGTGGTGAAGAAAGCAAAGAAGAAGCCAAAAAAGAAGAGAATAATGTGGTGGTGGTGCCTTACAATAACATTGATGATGAAGGCTTAAAGAGGATGATGTACTATTATCAGTACCCTCCACTCTCTGTCATTGAAAGAATACCACCTCCACAACTCTTCAGTGATGAAAATCCTAATGCATGCTGCATTGTATAA >Glyma02g38750.4 sequence type=CDS gene model=Glyma02g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGGAAGCAAAACAGGAGCAAGTACAACCAGTGGCTGAAGCCAAGCCTGAGGAGAAGAAAGAAGAGAAGGCAGAGGAAAAGCCAGCAGAGGAAAAGAAGGAAGAAAAACCAGAAGAAAAGACAGAAGATGAGAAGAAGGAAGAGCCTAAACCACCTTCACCATGTGTGCTGTTTGTGGACTTGCATTGTGAGGGATGTGCCAAGAAAATTGAGAGATACATTATGAAAATGAGAGGAGTTGAAGGAGTGGTAATTGACATGGCTAAAAATGAAGTGACCATAAAGGGTATAGTGGAGCCTCAAGCAATCTGCAACACAATCACAAAGAAAACAAAGAGAAGAGCAAGTGTTATATCTCCATTGCCTGAAGCAGAAGGAGAACCTATACCAGAAGTTGTCAATTCTCAGGTTAGTGGACCAGTTACTGTGGAACTGAATGTAAACATGCACTGTGAGGCCTGTGCTGAGCAACTCAAGAGGAAGATACTACAAATGAGAGGAGTTCAAACAGCAATGACAGAGTTTAGCACAGGGAAGGTTCTTGTGACAGGAATCATGGATGCAAACAAACTAGTAGATTATGTATATAGACGCACCAAAAAGCAAGCTAAGATAGTTCCTCAGCCAGAACCAGAACCAGAAAAGAAAGAAGAGAAACCTGCAGAAGAAGAGACTAAACCTGAAGAGGAGAAGCCACCAGAGGAAGCAAAGAAAGAAGAGGGTGGTGAGAACAAAGAAGAAAAGGGTGGTGAAGAAAGCAAAGAAGAAGCCAAAAAAGAAGAGAATAATGTGGTGGTGGTGCCTTACAATAACATTGATGATGAAGGCTTAAAGAGGATGATGTACTATTATCAGTACCCTCCACTCTCTGTCATTGAAAGAATACCACCTCCACAACTCTTCAGTGATGAAAATCCTAATGCATGCTGCATTGTATAA
>Glyma02g38750.3 sequence type=predicted peptide gene model=Glyma02g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEEAKQEQVQPVAEAKPEEKKEEKAEEKPAEEKKEEKPEEKTEDEKKEEPKPPSPCVLFVDLHCEGCAKKIERYIMKMRGVEGVVIDMAKNEVTIKGIVEPQAICNTITKKTKRRASVISPLPEAEGEPIPEVVNSQVSGPVTVELNVNMHCEACAEQLKRKILQMRGVQTAMTEFSTGKVLVTGIMDANKLVDYVYRRTKKQAKIVPQPEPEPEKKEEKPAEEETKPEEEKPPEEAKKEEGGENKEEKGGEESKEEAKKEENNVVVVPYNNIDDEGLKRMMYYYQYPPLSVIERIPPPQLFSDENPNACCIV* >Glyma02g38750.4 sequence type=predicted peptide gene model=Glyma02g38750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEEAKQEQVQPVAEAKPEEKKEEKAEEKPAEEKKEEKPEEKTEDEKKEEPKPPSPCVLFVDLHCEGCAKKIERYIMKMRGVEGVVIDMAKNEVTIKGIVEPQAICNTITKKTKRRASVISPLPEAEGEPIPEVVNSQVSGPVTVELNVNMHCEACAEQLKRKILQMRGVQTAMTEFSTGKVLVTGIMDANKLVDYVYRRTKKQAKIVPQPEPEPEKKEEKPAEEETKPEEEKPPEEAKKEEGGENKEEKGGEESKEEAKKEENNVVVVPYNNIDDEGLKRMMYYYQYPPLSVIERIPPPQLFSDENPNACCIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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