Glyma02g38560 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma02g38560): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma02g38560): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma02g38560

Feature Type:	gene_model
Chromosome:	Gm02
Start:	43961409
stop:	43964744
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g38560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24610	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:8428577-8429017 FORWARD LENGTH=146	SoyBase	E_val: 3.00E-74	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6T4G7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4G7_SOYBN	SoyBase	E_val: 2.00E-104	ISS
UniRef100_Q337D0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q337D0_ORYSJ	SoyBase	E_val: 3.00E-72	ISS

Expression Patterns of Glyma02g38560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g38560 not represented in the dataset	Glyma02g38560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g38560

Paralog	Evidence	Comments
Glyma14g36750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g38560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g221000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g38560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g38560

Limit To All Plant Sequences

>Glyma02g38560.3   sequence type=transcript   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACGTTGGACTTAGATCCGATAGTTAATGCAAAATTGAAGGAGACGCCGCCACCTAACAAGTCCCGACCCGAATGTGACATGTTTTTGCATTTGGGTCACAATTTGCCCGAAATTTAACTCGCATTTCTTCCGGTTGTTCGTTTTGTCCTACGTTCGAGTGTGTCCCACAAGTGCACAGTGTCCATCACTGCTGGTTTCTATAAATACTCAAACCCATTGTGCCTCATTCGTTGCTTATTTTAATTTTTCTAGCTTTTGCTTTGCTTAGATTCTGTTCTGCAGAGAGAGAGAGAGAGAGTTTCAGAATTTAGAGAGAGAATTTTATTTTGTTTTTTCGGTTATCTTTATTGGTTTCTCTTACATCGTTTTTGTAGGCGCTGAGGAAGAAGCTTTGGCAGCATAACTTTGTTGGGGAGCATAAAATTCAGGCAAGCCCTTGAAGTTGGAGAGTATTAGATGGGAATCTTAGAATTTTCTCTTTAGACCAAAGAAATGGAGGTATATGGAAATTCTATGGTTGCAGCTCCTTCAAATGTTATTTATCTGTCCAGTATTTTGGGCCAAGGCGGTCCAATTCCCGGTCACAGATGCAACTGGAAATGTGAAAATGAACATGTTTGTGGAAACATGTATCGCTGCAAGCTAACAGGGCTGACTCACATTTGTGATAAAAACTGTAACCAGAGAATTCTGTATGATAACCATAGCTCACTTTGCCTAGCAAGTGGTCAAATTTTCCCCCTTACGCCGGAAGAGGAACAAGCAGTGAGAGGTGTTCGCAGGAAGCTTGACATGGAGAATTCGCCCTCTGATAGCTGTGGTTTTAAGCGTAGACGAGATGCTCAATTCCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCAGTCCTATCTGCAGCCAAGTTGGAGATGGCATGGATATGAAATAGTTATCTATTATATAACTGCAAGGACTCTTCTTTATCATTTCTCTTGTCCCTTTGAAGTTTTTCACTTTTTTCTATCGGATGAGTATTGATAACAGAACTTGAACAATTATGGATTATTTATTGGTGGACATGATGTGTCCCCTTCTGCTGTAGGAAGTCCTTATATTTCTAGTATTAATGTAATTGTATCCTTTAAAGTAGCTTGACTGTTGAATGGGGATTTGAGGCAGGGTCTTTGTACGCGACACGTTTATGACACTTGAATTGACTTCAGTTTTCTGCTAAACCTAGTGAGAAGCTGATTGTCGTAGCTGACTATGGAATACATTCTGGCCTTTTACATTGCTTGAATTTGATTTGGACCTCAGTGATGCATATATGAGCAATGCATTGCAACTTCTGCTCGAGTTTTTCTTTGCTGAAGTTTGGACAAGCCAACTGTTACGGGACTACAAAGAGTTTTAAAGACTAAGTAGGAAATCCTAATTAGTAGGGATGCCTAATCAAAGAACATTTATGATACTGTACAGATACGACAGACACTATTCAAAGATGAAAAAATGTGAGGTGACAAGGGCAAATAAAGGGGGACCTTATTAGGGATACTTATCAGCACAAGCACCAGCAGCATCAATCTTTCTAACATGCATATTGTTCCTCTTTGTATTCATTGTATTCAAAGATTGAAAATGAATTCTCTCCTAATAGCCATGTTACTGTTTTCTGCAAAATTTTGTACTTGTAATATGTTCTAGGCAGATGTGATCAATCTAATCTTGTATCGGTTTATATAGGCTGATGAAGGTTTTTATTTTGAATTTATGGTATTTGTGAAGCTAGAGGTTTGTAATGTTTCATTTTCTAACTTTTGACTTGTGATTATTATTATTAAGCTAAATATGTAATTAGGCTTG

>Glyma02g38560.4   sequence type=transcript   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACGTTGGACTTAGATCCGATAGTTAATGCAAAATTGAAGGAGACGCCGCCACCTAACAAGTCCCGACCCGAATGTGACATGTTTTTGCATTTGGGTCACAATTTGCCCGAAATTTAACTCGCATTTCTTCCGGTTGTTCGTTTTGTCCTACGTTCGAGTGTGTCCCACAAGTGCACAGTGTCCATCACTGCTGGTTTCTATAAATACTCAAACCCATTGTGCCTCATTCGTTGCTTATTTTAATTTTTCTAGCTTTTGCTTTGCTTAGATTCTGTTCTGCAGAGAGAGAGAGAGAGAGTTTCAGAATTTAGAGAGAGAATTTTATTTTGTTTTTTCGGTTATCTTTATTGGTTTCTCTTACATCGTTTTTGTAGGCGCTGAGGAAGAAGCTTTGGCAGCATAACTTTGTTGGGGAGCATAAAATTCAGGCAAGCCCTTGAAGTTGGAGAGTATTAGATGGGAATCTTAGAATTTTCTCTTTAGACCAAAGAAATGGAGGTATATGGAAATTCTATGGTTGCAGCTCCTTCAAATGTTATTTATCTGTCCAGTATTTTGGGCCAAGGCGGTCCAATTCCCGGTCACAGATGCAACTGGAAATGTGAAAATGAACATGTTTGTGGAAACATGTATCGCTGCAAGCTAACAGGGCTGACTCACATTTGTGATAAAAACTGTAACCAGAGAATTCTGTATGATAACCATAGCTCACTTTGCCTAGCAAGTGGTCAAATTTTCCCCCTTACGCCGGAAGAGGAACAAGCAGTGAGAGGTGTTCGCAGGAAGCTTGACATGGAGAATTCGCCCTCTGATAGCTGTGGTTTTAAGCGTAGACGAGATGCTCAATTCCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCAGTCCTATCTGCAGCCAAGTTGGAGATGGCATGGATATGAAATAGTTATCTATTATATAACTGCAAGGACTCTTCTTTATCATTTCTCTTGTCCCTTTGAAGTTTTTCACTTTTTTCTATCGGATGAGTATTGATAACAGAACTTGAACAATTATGGATTATTTATTGGTGGACATGATGTGTCCCCTTCTGCTGTAGGAAGTCCTTATATTTCTAGTATTAATGTAATTGTATCCTTTAAAGTAGCTTGACTGTTGAATGGGGATTTGAGGCAGGGTCTTTGTACGCGACACGTTTATGACACTTGAATTGACTTCAGTTTTCTGCTAAACCTAGTGAGAAGCTGATTGTCGTAGCTGACTATGGAATACATTCTGGCCTTTTACATTGCTTGAATTTGATTTGGACCTCAGTGATGCATATATGAGCAATGTACTTAACTGTAATCCTTTTTTTAGCTGACCATCAAGTTTCTAGTGTATCTGTAATCACAAAGCAGCCTATTAATATATTCATTACTATTACTACTGTCATGAGCTTGTATTCCTTAATTCTGTATGAACAAAAAACAGTTATTTTGTCCCTGCTGATAAATCTATTGAGAACCTTGACTTCTGAGGCTGAGGTTCTCTCCAGTTTGTCATATGAACAAAGTTATTGGTATGCTTTTTGGTGAATTGATTTTGGTTTTGCTGCTTGATTCTTCCTATTTCTGTTACAGGCTCAAGGGAGATGATCTAGTTCTCATTTTCATTCCTCTTAATCATTTTCTGATATCTTTTTTTTTTTCTGTGATTTGATTGATGGTTGGCTGTCTGAGGTTAACGTAACTTGTGCAGGTTTTGAAGCATATGCTAGGAAGGAGCGTTCAAAACTTTATTTGTGTTGCATTACTGAATTAATTCTTATGATATAAAATTGTTCTATGTTTGAATATCAATTATTGATAAATGTCTTGTTTTCATGAATGAATGCAGGCATTGCAACTTCTGCTCGAGTTTTTCTTTGCTGAAGTTTGGACAAGCCAACTGTTACGGGACTACAAAGAGTTTTAAAGACTAAGTAGGAAATCCTAATTAGTAGGGATGCCTAATCAAAGAACATTTATGATACTGTACAGATACGACAGACACTATTCAAAGATGAAAAAATGTGAGGTGACAAGGGCAAATAAAGGGGGACCTTATTAGGGATACTTATCAGCACAAGCACCAGCAGCATCAATCTTTCTAACATGCATATTGTTCCTCTTTGTATTCATTGTATTCAAAGATTGAAAATGAATTCTCTCCTAATAGCCATGTTACTGTTTTCTGCAAAATTTTGTACTTGTAATATGTTCTAGGCAGATGTGATCAATCTAATCTTGTATCGGTTTATATAGGCTGATGAAGGTTTTTATTTTGAATTTATGGTATTTGTGAAGCTAGAGGTTTGTAATGTTTCATTTTCTAACTTTTGACTTGTGATTATTATTATTAAGCTAAATATGTAATTAGGCTTG

Coding sequences of Glyma02g38560

Limit To All Plant Sequences

>Glyma02g38560.2   sequence type=CDS   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTATATGGAAATTCTATGGTTGCAGCTCCTTCAAATGTTATTTATCTGTCCAGTATTTTGGGCCAAGGCGGTCCAATTCCCGGTCACAGATGCAACTGGAAATGTGAAAATGAACATGTTTGTGGAAACATGTATCGCTGCAAGCTAACAGGGCTGACTCACATTTGTGATAAAAACTGTAACCAGAGAATTCTGTATGATAACCATAGCTCACTTTGCCTAGCAAGTGGTCAAATTTTCCCCCTTACGCCGGAAGAGGAACAAGCAGTGAGAGGTGTTCGCAGGAAGCTTGACATGGAGAATTCGCCCTCTGATAGCTGTGGTTTTAAGCGTAGACGAGATGCTCAATTCCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCAGTCCTATCTGCAGCCAAGTTGGAGATGGCATGGATATGAAATAG

>Glyma02g38560.3   sequence type=CDS   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTATATGGAAATTCTATGGTTGCAGCTCCTTCAAATGTTATTTATCTGTCCAGTATTTTGGGCCAAGGCGGTCCAATTCCCGGTCACAGATGCAACTGGAAATGTGAAAATGAACATGTTTGTGGAAACATGTATCGCTGCAAGCTAACAGGGCTGACTCACATTTGTGATAAAAACTGTAACCAGAGAATTCTGTATGATAACCATAGCTCACTTTGCCTAGCAAGTGGTCAAATTTTCCCCCTTACGCCGGAAGAGGAACAAGCAGTGAGAGGTGTTCGCAGGAAGCTTGACATGGAGAATTCGCCCTCTGATAGCTGTGGTTTTAAGCGTAGACGAGATGCTCAATTCCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCAGTCCTATCTGCAGCCAAGTTGGAGATGGCATGGATATGAAATAG

>Glyma02g38560.4   sequence type=CDS   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTATATGGAAATTCTATGGTTGCAGCTCCTTCAAATGTTATTTATCTGTCCAGTATTTTGGGCCAAGGCGGTCCAATTCCCGGTCACAGATGCAACTGGAAATGTGAAAATGAACATGTTTGTGGAAACATGTATCGCTGCAAGCTAACAGGGCTGACTCACATTTGTGATAAAAACTGTAACCAGAGAATTCTGTATGATAACCATAGCTCACTTTGCCTAGCAAGTGGTCAAATTTTCCCCCTTACGCCGGAAGAGGAACAAGCAGTGAGAGGTGTTCGCAGGAAGCTTGACATGGAGAATTCGCCCTCTGATAGCTGTGGTTTTAAGCGTAGACGAGATGCTCAATTCCATCCTTCTCCTTTCGAGAGATCTTTCTCTGCTGTCAGTCCTATCTGCAGCCAAGTTGGAGATGGCATGGATATGAAATAG

Predicted protein sequences of Glyma02g38560

Limit To All Plant Sequences

>Glyma02g38560.2   sequence type=predicted peptide   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVYGNSMVAAPSNVIYLSSILGQGGPIPGHRCNWKCENEHVCGNMYRCKLTGLTHICDKNCNQRILYDNHSSLCLASGQIFPLTPEEEQAVRGVRRKLDMENSPSDSCGFKRRRDAQFHPSPFERSFSAVSPICSQVGDGMDMK*

>Glyma02g38560.3   sequence type=predicted peptide   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVYGNSMVAAPSNVIYLSSILGQGGPIPGHRCNWKCENEHVCGNMYRCKLTGLTHICDKNCNQRILYDNHSSLCLASGQIFPLTPEEEQAVRGVRRKLDMENSPSDSCGFKRRRDAQFHPSPFERSFSAVSPICSQVGDGMDMK*

>Glyma02g38560.4   sequence type=predicted peptide   gene model=Glyma02g38560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVYGNSMVAAPSNVIYLSSILGQGGPIPGHRCNWKCENEHVCGNMYRCKLTGLTHICDKNCNQRILYDNHSSLCLASGQIFPLTPEEEQAVRGVRRKLDMENSPSDSCGFKRRRDAQFHPSPFERSFSAVSPICSQVGDGMDMK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain