Report for Sequence Feature Glyma02g38550
Feature Type: gene_model
Chromosome: Gm02
Start: 43958039
stop: 43960155
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g38550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24620 AT
Annotation by Michelle Graham. TAIR10: Pathogenesis-related thaumatin superfamily protein | chr5:8430918-8432289 FORWARD LENGTH=420
SoyBase E_val: 1.00E-120 ISS
GO:0051707 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to other organism
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
PF00314 PFAM
Thaumatin family
JGI ISS
UniRef100_G7K661 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Thaumatin-like protein n=1 Tax=Medicago truncatula RepID=G7K661_MEDTR
SoyBase E_val: 9.00E-158 ISS
UniRef100_I1JH70 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JH70_SOYBN
SoyBase E_val: 3.00E-169 ISS
Expression Patterns of Glyma02g38550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g38550
Paralog Evidence Comments
Glyma14g36740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g38550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g220900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g38550
Coding sequences of Glyma02g38550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g38550.2 sequence type=CDS gene model=Glyma02g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTATAGTGATGACATCATGGAAGTTCCCAAGTTTTCTAGCTATTTTGTTTACTTTGTTATCTTATTCTTTCTCTTCAATATTCACCATAACAAACAACTGCTCCCATACTATATGGCCCGGGACACTCTCCGGTGCCGGCTCACCGCCACTTCCAACGACCGGATTCCGGCTGGACTCAGGCCAAATGATGAAACTCACAAGTGTGCCAGGGTGGTCAGGAAGGATATGGGCTAGGACTGGCTGCACATTTGATGCAACAGGAATTGGTAAGTGCCAAACTGGTGATTGTGGTGGAAGGCTGGAATGTGATGGAAATGGTGCAGCTCCTCCTACCTCATTGTTTGAGATAACACTTGGTAAAGGCAATGATCAAGACTACTATGATGTCAGCATGGTGGATGGCTACAATCTGCCACTGCTTGTGCAACCAAGAGGTGTATATGGTACTGGGGTCTGTAATGCCACAGGTTGTGTCACTGACATCAATAGAGGTTGTCCAAAAGAACTTCAAGTAGTTGGTGGAGATGCATACCAAGATGGTGTAGTTGGGTGTAAGAGTGCTTGTGAGGCATTTGGATCGGATCAGTACTGCTGCAGTGGAGAATTTGCCAATCCAACGACATGCCAGCCTTCCTATTATTCAACCCTTTTCAAGCAGGCTTGTCCAAAAGCCTATAGCTATGCATTTGATGATGCCACCAGCACTTTCATTTGCAAAGCTTTTGAATATGACATTATTTTTTGTCCCAATGGCAACAAGGTTAAAAAACCAAATGGTGCATTTCCACCTCCACCACCATCAATTGGATGGCCAGATCAGAAGTTTCAGCAGCAGGTTCATTCTTCTTCATATATTCTCTTACCCTGTACAGTGACATTCTTTCTCTTTGTTGCCACTCTCTCTGTGCTTGCAGCAAAGACTCAGACATTAATATGA
Predicted protein sequences of Glyma02g38550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g38550.2 sequence type=predicted peptide gene model=Glyma02g38550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPIVMTSWKFPSFLAILFTLLSYSFSSIFTITNNCSHTIWPGTLSGAGSPPLPTTGFRLDSGQMMKLTSVPGWSGRIWARTGCTFDATGIGKCQTGDCGGRLECDGNGAAPPTSLFEITLGKGNDQDYYDVSMVDGYNLPLLVQPRGVYGTGVCNATGCVTDINRGCPKELQVVGGDAYQDGVVGCKSACEAFGSDQYCCSGEFANPTTCQPSYYSTLFKQACPKAYSYAFDDATSTFICKAFEYDIIFCPNGNKVKKPNGAFPPPPPSIGWPDQKFQQQVHSSSYILLPCTVTFFLFVATLSVLAAKTQTLI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
