SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05200 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:1544206-1547082 REVERSE LENGTH=540 | SoyBase | E_val: 2.00E-153 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0010287 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1235 | KOG | Predicted unusual protein kinase | JGI | ISS | |
| PTHR10566 | Panther | CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED | JGI | ISS | |
| PTHR10566:SF10 | Panther | ABC1 - RELATED | JGI | ISS | |
| PF03109 | PFAM | ABC1 family | JGI | ISS | |
| UniRef100_G7KD96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AarF domain-containing protein kinase, putative n=1 Tax=Medicago truncatula RepID=G7KD96_MEDTR | SoyBase | E_val: 2.00E-156 | ISS |
| UniRef100_I1JH55 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JH55_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g38380 not represented in the dataset |
Glyma02g38380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g36520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g219300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g38380.3 sequence type=transcript gene model=Glyma02g38380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAACAACACATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTACTCTAAACATTAATTCGTCGAAGAAGGAGTTCACTGTGTTCTCTCGCTATGCGCAAGTGCGAGACCTATTCTCCTCTCGTCGATTCCAAGATAGCATGGAGAAGCTGCCGAACCTGGTGGCGGACATTGTGCAGACGTCCTTAAACACTGGTCCCAGGGGTGTCCTTAGGTTGGCTCAAGGTGTTCAGGCCTTCCTTGGCGTTGGTCAGGAGTGGTTAACTGATGTCTCTAAGTCAGCAAATTCATCTACTGGGTTACCGACTGAACTGAAGCTTGGTTTACTCTTCCCCTTTTATTTGAGGAGGCTGTTTGAGCGCATGGGTGCAACCTATATCAAATTGGGTCAGGCCAGCATTTCACAGTTAAAGCATAAACTGCACAAGATACTGAAGAGTCAAGAAATCATTCTTGAAGAGAAAAGGGTGAAAGATGAGGAAAGGATGGAGACGCATCCCTCTCACATCAAGAAGACTGAGGGAATAAAAGAGATCAAGATGTGGCTGGAGAGGTGGATGCAGGAACAAGACATCATGTTAGAGGACAAGATTACGAATAAGCAAAGCATTCAAGAGGAGATCAATGCCCATTCACCCAATCATGTCAATAAGACCATGGAAGGGAGTGGGTCAGAATGCGGCGATAATACAGAGGTTCATTCTTGGACAAGAAAGGTGCAGTTAGCCACCTTTGGGGGTTGCACAAAGGGAGAAGCAAAAGAGGATCACCTTGTTTGTGTGTTACATCAAGCATTGGAAACAATAAATACAATAATGAGAGCAATTCATAGCATCAGCACCAATGCTGTTCCTTTTGAGGAAATTGAATCTATATTGCGCAAGGAATTAGGAAAGCCATTAGAAAGCGTTTATGAATACATTGACCCAACACCAGTTGCTTCTGCTTCTATACCACAGGTTCATGGTGCAAGGCTAAAAGGCTCCTGGGAGGATGTGGTTATAAAGGTCTTAAAACCTGGAATAGAGGACATATTAGTGGCAGATCTTAATTTTGTTTATGTTGTTGCTAGGATATTGGAGTTCTTGAGTCCTGAAATAAGCCGAACATCACTATCTATGCTTGAAGAAGTTGATTTTTACAAGGAGGCTGCAAATATTGAGGCTTTCAGGAGATATTTAGAAACAATGGGACTCACAGGGAATGCAACAGCTCCAAAAGTGTATCAATACTGCAGTACAAAGAAAGTTTTAACTATGCAAAGACTATATGGAGTTCCTCTTACTGACCTAGACTCCATAAGTTCATTAGTTTCTAATCCAGAAACCAGCCTTATAACTGCTCTCAATGTGTGGTTTGGAAGTTTGCTTGCATGTAAATTGTTTCATGCAGATGTACATGCAGGAAATCTGTGGCTTCTACATGATGGTCATATTCGGTTTCTTAACTTTGTCCGAGATCATAGTTTTACTGGGACAAATTTTGGGTGTCCACGGGAAAAGAGAAAGCTCAATGTGAAAGACATTTCTTTCACCACAGACATTATCTCAAAAATCTCAATAGAATTGGACACTGAAATAGTCGTAGCAACCACAACTGGAACAGCCACAAATGCAACCGCTGTCGCTGCTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTCTTTCTTGGTGTGTTCAAAATCTCATTGTTAGCTTCTGAATTTGCTCTTCTCCTGAAACAGCTCTTGTACTTTGACCGGTACACACGGTTGTTGGCTCCCAACTTGAACATGCTTCAGGATCAGAGGATTTCCATTGCTTCCAATAGAAGAAGCAGGGTATAG
>Glyma02g38380.1 sequence type=CDS gene model=Glyma02g38380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAACAACACATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTACTCTAAACATTAATTCGTCGAAGAAGGAGTTCACTGTGTTCTCTCGCTATGCGCAAGTGCGAGACCTATTCTCCTCTCGTCGATTCCAAGATAGCATGGAGAAGCTGCCGAACCTGGTGGCGGACATTGTGCAGACGTCCTTAAACACTGGTCCCAGGGGTGTCCTTAGGTTGGCTCAAGGTGTTCAGGCCTTCCTTGGCGTTGGTCAGGAGTGGTTAACTGATGTCTCTAAGTCAGCAAATTCATCTACTGGGTTACCGACTGAACTGAAGCTTGGTTTACTCTTCCCCTTTTATTTGAGGAGGCTGTTTGAGCGCATGGGTGCAACCTATATCAAATTGGGTCAGGCCAGCATTTCACAGTTAAAGCATAAACTGCACAAGATACTGAAGAGTCAAGAAATCATTCTTGAAGAGAAAAGGGTGAAAGATGAGGAAAGGATGGAGACGCATCCCTCTCACATCAAGAAGACTGAGGGAATAAAAGAGATCAAGATGTGGCTGGAGAGGTGGATGCAGGAACAAGACATCATGTTAGAGGACAAGATTACGAATAAGCAAAGCATTCAAGAGGAGATCAATGCCCATTCACCCAATCATGTCAATAAGACCATGGAAGGGAGTGGGTCAGAATGCGGCGATAATACAGAGGTTCATTCTTGGACAAGAAAGGTGCAGTTAGCCACCTTTGGGGGTTGCACAAAGGGAGAAGCAAAAGAGGATCACCTTGTTTGTGTGTTACATCAAGCATTGGAAACAATAAATACAATAATGAGAGCAATTCATAGCATCAGCACCAATGCTGTTCCTTTTGAGGAAATTGAATCTATATTGCGCAAGGAATTAGGAAAGCCATTAGAAAGCGTTTATGAATACATTGACCCAACACCAGTTGCTTCTGCTTCTATACCACAGGTTCATGGTGCAAGGCTAAAAGGCTCCTGGGAGGATGTGGTTATAAAGGTCTTAAAACCTGGAATAGAGGACATATTAGTGGCAGATCTTAATTTTGTTTATGTTGTTGCTAGGATATTGGAGTTCTTGAGTCCTGAAATAAGCCGAACATCACTATCTATGCTTGAAGAAGTTGATTTTTACAAGGAGGCTGCAAATATTGAGGCTTTCAGGAGATATTTAGAAACAATGGGACTCACAGGGAATGCAACAGCTCCAAAAGTGTATCAATACTGCAGTACAAAGAAAGTTTTAACTATGCAAAGACTATATGGAGTTCCTCTTACTGACCTAGACTCCATAAGTTCATTAGTTTCTAATCCAGAAACCAGCCTTATAACTGCTCTCAATGTGTGGTTTGGAAGTTTGCTTGCATGTAAATTGTTTCATGCAGATGTACATGCAGGAAATCTGTGGCTTCTACATGATGGTCATATTCGGTTTCTTAACTTTGGTATGCTTGAGCTTTATCTTCTTTGTGCATATTTATAA >Glyma02g38380.3 sequence type=CDS gene model=Glyma02g38380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAACAACACATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTGTACTCTAAACATTAATTCGTCGAAGAAGGAGTTCACTGTGTTCTCTCGCTATGCGCAAGTGCGAGACCTATTCTCCTCTCGTCGATTCCAAGATAGCATGGAGAAGCTGCCGAACCTGGTGGCGGACATTGTGCAGACGTCCTTAAACACTGGTCCCAGGGGTGTCCTTAGGTTGGCTCAAGGTGTTCAGGCCTTCCTTGGCGTTGGTCAGGAGTGGTTAACTGATGTCTCTAAGTCAGCAAATTCATCTACTGGGTTACCGACTGAACTGAAGCTTGGTTTACTCTTCCCCTTTTATTTGAGGAGGCTGTTTGAGCGCATGGGTGCAACCTATATCAAATTGGGTCAGGCCAGCATTTCACAGTTAAAGCATAAACTGCACAAGATACTGAAGAGTCAAGAAATCATTCTTGAAGAGAAAAGGGTGAAAGATGAGGAAAGGATGGAGACGCATCCCTCTCACATCAAGAAGACTGAGGGAATAAAAGAGATCAAGATGTGGCTGGAGAGGTGGATGCAGGAACAAGACATCATGTTAGAGGACAAGATTACGAATAAGCAAAGCATTCAAGAGGAGATCAATGCCCATTCACCCAATCATGTCAATAAGACCATGGAAGGGAGTGGGTCAGAATGCGGCGATAATACAGAGGTTCATTCTTGGACAAGAAAGGTGCAGTTAGCCACCTTTGGGGGTTGCACAAAGGGAGAAGCAAAAGAGGATCACCTTGTTTGTGTGTTACATCAAGCATTGGAAACAATAAATACAATAATGAGAGCAATTCATAGCATCAGCACCAATGCTGTTCCTTTTGAGGAAATTGAATCTATATTGCGCAAGGAATTAGGAAAGCCATTAGAAAGCGTTTATGAATACATTGACCCAACACCAGTTGCTTCTGCTTCTATACCACAGGTTCATGGTGCAAGGCTAAAAGGCTCCTGGGAGGATGTGGTTATAAAGGTCTTAAAACCTGGAATAGAGGACATATTAGTGGCAGATCTTAATTTTGTTTATGTTGTTGCTAGGATATTGGAGTTCTTGAGTCCTGAAATAAGCCGAACATCACTATCTATGCTTGAAGAAGTTGATTTTTACAAGGAGGCTGCAAATATTGAGGCTTTCAGGAGATATTTAGAAACAATGGGACTCACAGGGAATGCAACAGCTCCAAAAGTGTATCAATACTGCAGTACAAAGAAAGTTTTAACTATGCAAAGACTATATGGAGTTCCTCTTACTGACCTAGACTCCATAAGTTCATTAGTTTCTAATCCAGAAACCAGCCTTATAACTGCTCTCAATGTGTGGTTTGGAAGTTTGCTTGCATGTAAATTGTTTCATGCAGATGTACATGCAGGAAATCTGTGGCTTCTACATGATGGTCATATTCGGTTTCTTAACTTTGTCCGAGATCATAGTTTTACTGGGACAAATTTTGGGTGTCCACGGGAAAAGAGAAAGCTCAATGTGAAAGACATTTCTTTCACCACAGACATTATCTCAAAAATCTCAATAGAATTGGACACTGAAATAGTCGTAGCAACCACAACTGGAACAGCCACAAATGCAACCGCTGTCGCTGCTAATGTAGTTGTTGATGAGAGGCAGATGAATGCACTCTTTCTTGGTGTGTTCAAAATCTCATTGTTAGCTTCTGAATTTGCTCTTCTCCTGAAACAGCTCTTGTACTTTGACCGGTACACACGGTTGTTGGCTCCCAACTTGAACATGCTTCAGGATCAGAGGATTTCCATTGCTTCCAATAGAAGAAGCAGGGTATAG
>Glyma02g38380.1 sequence type=predicted peptide gene model=Glyma02g38380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNNTFRKKGRRFWACTLNINSSKKEFTVFSRYAQVRDLFSSRRFQDSMEKLPNLVADIVQTSLNTGPRGVLRLAQGVQAFLGVGQEWLTDVSKSANSSTGLPTELKLGLLFPFYLRRLFERMGATYIKLGQASISQLKHKLHKILKSQEIILEEKRVKDEERMETHPSHIKKTEGIKEIKMWLERWMQEQDIMLEDKITNKQSIQEEINAHSPNHVNKTMEGSGSECGDNTEVHSWTRKVQLATFGGCTKGEAKEDHLVCVLHQALETINTIMRAIHSISTNAVPFEEIESILRKELGKPLESVYEYIDPTPVASASIPQVHGARLKGSWEDVVIKVLKPGIEDILVADLNFVYVVARILEFLSPEISRTSLSMLEEVDFYKEAANIEAFRRYLETMGLTGNATAPKVYQYCSTKKVLTMQRLYGVPLTDLDSISSLVSNPETSLITALNVWFGSLLACKLFHADVHAGNLWLLHDGHIRFLNFGMLELYLLCAYL* >Glyma02g38380.3 sequence type=predicted peptide gene model=Glyma02g38380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNNTFRKKGRRFWACTLNINSSKKEFTVFSRYAQVRDLFSSRRFQDSMEKLPNLVADIVQTSLNTGPRGVLRLAQGVQAFLGVGQEWLTDVSKSANSSTGLPTELKLGLLFPFYLRRLFERMGATYIKLGQASISQLKHKLHKILKSQEIILEEKRVKDEERMETHPSHIKKTEGIKEIKMWLERWMQEQDIMLEDKITNKQSIQEEINAHSPNHVNKTMEGSGSECGDNTEVHSWTRKVQLATFGGCTKGEAKEDHLVCVLHQALETINTIMRAIHSISTNAVPFEEIESILRKELGKPLESVYEYIDPTPVASASIPQVHGARLKGSWEDVVIKVLKPGIEDILVADLNFVYVVARILEFLSPEISRTSLSMLEEVDFYKEAANIEAFRRYLETMGLTGNATAPKVYQYCSTKKVLTMQRLYGVPLTDLDSISSLVSNPETSLITALNVWFGSLLACKLFHADVHAGNLWLLHDGHIRFLNFVRDHSFTGTNFGCPREKRKLNVKDISFTTDIISKISIELDTEIVVATTTGTATNATAVAANVVVDERQMNALFLGVFKISLLASEFALLLKQLLYFDRYTRLLAPNLNMLQDQRISIASNRRSRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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