SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40760 | AT | Annotation by Michelle Graham. TAIR10: Rhodanese/Cell cycle control phosphatase superfamily protein | chr2:17010050-17011968 FORWARD LENGTH=474 | SoyBase | E_val: 0 | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1530 | KOG | Rhodanese-related sulfurtransferase | JGI | ISS | |
| PTHR18838 | Panther | RHODANESE-LIKE DOMAIN-CONTAINING | JGI | ISS | |
| PF00581 | PFAM | Rhodanese-like domain | JGI | ISS | |
| UniRef100_G7KD73 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UPF0176 protein MTR_5g067730 n=1 Tax=Medicago truncatula RepID=G7KD73_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JH51 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JH51_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g38340 not represented in the dataset |
Glyma02g38340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g218900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g38340.2 sequence type=CDS gene model=Glyma02g38340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCGCATCCAAACGCGGCCATGCTGAGAACCCGAACTATAATACCTTCTCCTCCACCATCACTCGCCCTGAGTAAGAGGCTGCCGTCACCGTCACCGTCACCATCACCGTTACCGTTACTGTCACCGTCCGTTATCCTCTCCGAACCCGTGAAACCCTCGTTCCACCGGTTTCCTCTGTTCTCGAATCCTCACACTCTTCGAACCATGACGCTCTCCAAGTGTTTCTCTCACTCCGGGCCCAAACCCGAATCCGAACCCGAACCGGAACCCGATTCACCTCACACTCTCGTTGTGGTTTCATTCTACAAGTTCGCGGATTTCCCCGACCACGCCCTCTTGCGAAATCCCTTGAAGCAACTGTGCCAACGCCTGCGTGTTTCAGGTGGAATTATTCTTGCACCGGAAGGGATCAATGGCAGCATATGTGGGACTCGGGAGTCAGTGGAGGAAGTTCTTACGTTTGTGGAGAGCGATGATCGATTAAAGGGGCTAAGGCGAGTGGAATCACCTGTTAGTCCTGAGGAGGAGGCCATCCATCATGGGCACAGTGCCACTTCTCCTCTTGCTGCAGGGGAAGATGCGCCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTCACTCTTGGGATGCCTACTGTGTCGCCTATTGAAAGGGTTGGAAAGTATATTGGCCCAGAAGAGTGGAATGCTTTGATTAGCAATCCAGATACAGTGGTAATTGATGTGCGGAATAACTATGAAACCAGAATAGGAAAATTTAAAGGAGCAGTTGATCCTTGTACCACATCATTTCGTGAATTCCCATCTTGGGTGGATGAGCATTTCCAGCTTACTGAAACAGATGATAGGGAGCATCCAAAAGTTGAGGTAAACTCAGTCCAACCTGCTGAAAAAGAAATGGATAATAAAAGACAACATATGCCACGTGTTGCAATGTATTGCACTGGAGGTATTCGATGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAAAGAGGTTTTTCACCTAGAAGGTGGAATTCTAAAATATCTTGAGGAGGTTCCAGAGACAGAGAGCCTCTGGGAAGGGGAGTGCTTTGTTTTTGACAAACGAGTCTCTGTGGAGCATGGTTTGGTGCCCGGAAATTTCAAGCTCTGCTATGGTTGCAAACAACCTGTGAGTGATGCTGACATGGAAGCCCCGGAATATGAATATGGAGTCTCTTGTCCTCACTGTTTTGCACAGAAATCAGATGAAGAGAAGGAAAGGGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGAATCATAGGAGGTCCAGATAAGGGTCGCCGGCCAACTTGTGAACAGGAAAGTACTAATAGGAAACCAAACCAGCTTTCACGTTCTATTTAA
>Glyma02g38340.2 sequence type=predicted peptide gene model=Glyma02g38340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEAHPNAAMLRTRTIIPSPPPSLALSKRLPSPSPSPSPLPLLSPSVILSEPVKPSFHRFPLFSNPHTLRTMTLSKCFSHSGPKPESEPEPEPDSPHTLVVVSFYKFADFPDHALLRNPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEEVLTFVESDDRLKGLRRVESPVSPEEEAIHHGHSATSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYIGPEEWNALISNPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVDEHFQLTETDDREHPKVEVNSVQPAEKEMDNKRQHMPRVAMYCTGGIRCEKATSLLLSKGFKEVFHLEGGILKYLEEVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEYEYGVSCPHCFAQKSDEEKERARARQRQFERWGIIGGPDKGRRPTCEQESTNRKPNQLSRSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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