Glyma02g38290 - SoyBase

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Report for Sequence Feature Glyma02g38290

Feature Type:	gene_model
Chromosome:	Gm02
Start:	43718244
stop:	43720201
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g38290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58340	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr1:21653162-21655117 FORWARD LENGTH=532	SoyBase	E_val: 0	ISS
GO:0003156	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of organ formation	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0017119	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi transport complex	SoyBase	N/A	ISS
GO:0043226	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: organelle	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF38	Panther	NA+ DRIVEN MULTIDRUG EFFLUX PUMP	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_G7K627	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multidrug and toxin extrusion protein n=1 Tax=Medicago truncatula RepID=G7K627_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337524	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337524 related cluster n=1 Tax=unknown RepID=UPI0002337524	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g38290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g38290 not represented in the dataset	Glyma02g38290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g38290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g218400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g38290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g38290

Limit To All Plant Sequences

>Glyma02g38290.2   sequence type=CDS   gene model=Glyma02g38290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTAATCCAAAGCCATCTTCCGTATCCCCATTTCTCAGTCCCACAAAATCCCACCCCAAATTGTGTACCCTTCCGCTGAATCTGATGATCAAGTTCGAGAGGAAGTGCACGTATGGGCGAGTCTTAATGAGAGCTATGATCTCTATGATTTTCCTTGGCTACCTTGGTGAGATGGAACTAGCAGGAGGGTCTCTCTCCATTGGTTTTGCCAACATCACTGGCTACTCTGTGATTTCTGGATTAGCCATGGGAATGGAACCAATCTGTGGACAAGCATATGGAGCAAAGCAATGGAAGATTCTTGGCTTGACACTTCAGAGAACCGTTCTCCTTCTACTCTCAACCTCCATCCCCATCTCATTCATGTGGCTCAACATGAAGAGAATCCTCTTGTGGTCAGGCCAAGACCAAGAAATAGCATCAGTGGCACAAACCTTCATCACTTTCTCAATCCCTGACCTCTTCTTGCTCTCACTCCTCCACCCTCTAAGAATCTACCTCAGGACTCAAAGCATCACATTGCCACTCACATATTGCTCAGCCATCTCAGTTCTTCTCCATGTGCCTCTGAATTTCCTCCTTGTGGTTCACCTCAAGATGGGAATTGCTGGGGTGGCAACAGCAATGGTGCTAACTAACCTCAACCTTATTCTCTTTATTTCCTCCTTTGTGTACTTTTCTGGTGCATACAAGGCCTCATGGGTTTCCCCTAGTGTGGACTGCATCAAAGGGTGGTCCTCATTGCTATCACTTGCAATTCCAACTTGTGTCTCAGTTTGCCTTGAGTGGTGGTGGTATGAGTTCATGATAATGCTGTGTGGCCTTTTGGTGAATCCAAAAGCAACCATTGCTTCAATGGGGATCCTAATCCAAACAACATCTTTGGTCTATGTGTTCCCATCATCACTCAGCCTTGGTGTTTCAACAAGGGTAGGGAATGAGTTAGGTGCAAAGAATCCTAGAAAGGCAAGAGTGTCAATGATAGTTTCACTCTTTTGTGCTCTGGCTTTAGGCCTTGCAGCAATGCTATTCACCACCTTGATGAGGCACCAATGGGGGAGATTCTTCACCAATGACCATGAAATTTTGGAACTTACATCACTGGTGCTGCCAATTGCTGGCCTTTGTGAGCTTGGGAACTGCCCTCAGACCACAGGCTGTGGAGTCCTGAGGGGAAGTGCAAGACCAACCATTGGTGCCAACATCAATTTGGGCTCATTTTATTTGGTGGGTATGCCAGTGGCTATCCTTTTGAGCTTTGTGGCCAAAATGGGGTTTCCAGGGCTCTGGCTTGGGTTGCTTGCAGCCCAAGCCTCATGTGCCGGCCTCATGTTCTATGTTCTTTGTACAACAGATTGGAATGTGCAAGTGGAAAGAGCCAAGGAACTCACAAAATCTTCAACAACAACAACTACTGCTATGACTGCGACTATTGCTACGACTTCTTGTTCTACTTCTCCTAATTGTAACTACAAATTGTTACCTACACTCACCAAAAAAGAAGCTAACATGAACAAGAATGCACATGTTTGTCTCGAAGAGATAGTTATTACTAGTGGTGGTGGTGGTGATGAGCTTACCAAGATATCTTCAGTTGAAACAGATCCACTGATCATTCCAACTACCAAACATACTCAAGTTTAG

Predicted protein sequences of Glyma02g38290

Limit To All Plant Sequences

>Glyma02g38290.2   sequence type=predicted peptide   gene model=Glyma02g38290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCNPKPSSVSPFLSPTKSHPKLCTLPLNLMIKFERKCTYGRVLMRAMISMIFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKILGLTLQRTVLLLLSTSIPISFMWLNMKRILLWSGQDQEIASVAQTFITFSIPDLFLLSLLHPLRIYLRTQSITLPLTYCSAISVLLHVPLNFLLVVHLKMGIAGVATAMVLTNLNLILFISSFVYFSGAYKASWVSPSVDCIKGWSSLLSLAIPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGAKNPRKARVSMIVSLFCALALGLAAMLFTTLMRHQWGRFFTNDHEILELTSLVLPIAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAILLSFVAKMGFPGLWLGLLAAQASCAGLMFYVLCTTDWNVQVERAKELTKSSTTTTTAMTATIATTSCSTSPNCNYKLLPTLTKKEANMNKNAHVCLEEIVITSGGGGDELTKISSVETDPLIIPTTKHTQV*

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