SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24400 | AT | Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 8 | chr4:12617379-12620481 FORWARD LENGTH=445 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0583 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24343 | Panther | SERINE/THREONINE KINASE | JGI | ISS | |
| PTHR24343:SF70 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF03822 | PFAM | NAF domain | JGI | ISS | |
| UniRef100_Q53VM2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr protein kinase n=1 Tax=Lotus japonicus RepID=Q53VM2_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001B64290 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B64290 related cluster n=1 Tax=unknown RepID=UPI0001B64290 | SoyBase | E_val: 0 | ISS |
|
Glyma02g38180 not represented in the dataset |
Glyma02g38180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g217300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g38180.2 sequence type=CDS gene model=Glyma02g38180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTTGAGGAAAGTGGGTAAGTATGAGATTGGAAGGACCGTTGGAGAGGGAACGTTTGCGAAGGTAAAGTTCGCTCAGAACACAGAGAGTGGCGAGAGTGTTGCCATGAAGGTGCTAGACCGTAGCGCCATCATCAAGCACAAAATGGTCGACCAGATCAAGAGGGAAATTTCTATCATGAAGCTAGTCAGGCATCCATATGTCGTTCGTCTACACGAGGTTCTAGCAAGCCGTACTAAGATTTATATCATATTGGAGTTTATTACAGGTGGTGAATTGTTTGATAAAATTGTAAGCCATGGGCGTCTTAGTGAAGCTGAATCTAGAAGATACTTCCAACAGCTTATTGATGGTGTAGATTTTTGCCACAGCAAGGGAGTTTATCATAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTTCCAGAACAGGGGGTCAGTTTGCTTCGGACAACTTGTGGGACTCCTAATTATGTAGCTCCTGAGGTACTCAGTCACAAGGGTTATAATGGGGCTCCAGCAGATGTTTGGTCCTGTGGAGTTATCCTCTACGTTCTATTGGCTGGATATCTTCCCTTTGACGAACTTGATCTAACTACGTTGTACAGTAAGATTGAGAAAGCACAGTTTTCGTGCCCTCCTTCGTTTCCTGTGGGAGCAAAGTCTTTAATACACACAATGCTGGACCCAAATCCTGAACGTCGTATAACCATTGAGCAGATAAGGAATGATGAGTGGTTTCAAAAGGAATATGTTCCGGTCAGTCTCATCGAGTATGAAGATGTAAATCTGGATGATGTAAATGCTGCATTTGACAATGATGAGGATCAGAGGACTAACCAGCAATGTGAGAATGACGACATGGGTCCTCTAACTCTTAATGCATTCGACATGATAATTTTATCTCAAGGCTTAAACCTTGCAACCCTATTTGATCGTGGACAGGACTCTATGAAATACGAAACGCGCTTCATCAGTCAAAAGCCACCAAAGGTGATTTTATCAAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACACATATTCGCAACTATAAGATGAGAATAGAGAGTATCTCAACAAATAAGGCTTCTTATTTCTCAGTTATACTAGAAGTCTTTGAAATTGCTCCTACATTTTTCATGGTGGATATTCAGAAAGCAGCTGGAGATGCTGGTGAATATCTCAAGTTTTACAAGAATTTTTCTAGCAATCTTGAGGATATCATGTGGAAACCGCCCCACGAAACAAGCAAATTAAGGAACTCCAAGACCAAAGGGCAGTGA
>Glyma02g38180.2 sequence type=predicted peptide gene model=Glyma02g38180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLRKVGKYEIGRTVGEGTFAKVKFAQNTESGESVAMKVLDRSAIIKHKMVDQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVSHGRLSEAESRRYFQQLIDGVDFCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSAFPEQGVSLLRTTCGTPNYVAPEVLSHKGYNGAPADVWSCGVILYVLLAGYLPFDELDLTTLYSKIEKAQFSCPPSFPVGAKSLIHTMLDPNPERRITIEQIRNDEWFQKEYVPVSLIEYEDVNLDDVNAAFDNDEDQRTNQQCENDDMGPLTLNAFDMIILSQGLNLATLFDRGQDSMKYETRFISQKPPKVILSSMEVVAQSMGFKTHIRNYKMRIESISTNKASYFSVILEVFEIAPTFFMVDIQKAAGDAGEYLKFYKNFSSNLEDIMWKPPHETSKLRNSKTKGQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
