Glyma02g38160 - SoyBase

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Report for Sequence Feature Glyma02g38160

Feature Type:	gene_model
Chromosome:	Gm02
Start:	43478728
stop:	43486317
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g38160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26780	AT	Annotation by Michelle Graham. TAIR10: serine hydroxymethyltransferase 2 \| chr5:9418299-9421725 FORWARD LENGTH=517	SoyBase	E_val: 0	ISS
GO:0006544	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine metabolic process	SoyBase	N/A	ISS
GO:0006563	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-serine metabolic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004372	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycine hydroxymethyltransferase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG2467	KOG	Glycine/serine hydroxymethyltransferase	JGI		ISS
PTHR11680	Panther	SERINE HYDROXYMETHYLTRANSFERASE	JGI		ISS
PF00464	PFAM	Serine hydroxymethyltransferase	JGI		ISS
UniRef100_G7K5Z4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine hydroxymethyltransferase n=1 Tax=Medicago truncatula RepID=G7K5Z4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001D62E90	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D62E90 related cluster n=1 Tax=unknown RepID=UPI0001D62E90	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g38160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g38160 not represented in the dataset	Glyma02g38160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g38160

Paralog	Evidence	Comments
Glyma14g36280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g38160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g217100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g38160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g38160

Limit To All Plant Sequences

>Glyma02g38160.4   sequence type=transcript   gene model=Glyma02g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTACATAATAATTTAACCCATAAATAACCTTAAGAACTTTTTGGTTTGAAAGAAATTTACAAACGATGTCGTGTGAAGGTGCCTATTGGTAGTTGCGATGTGGTACTGAACGAGTGAATGTCCCTATCCTCCCTGCTTTTCGATTCGCAGGGCCCACACATATTGCAAAAAAACACATACAAACCACCACCAACCTCCGCACCCACCCTCCCTCCCTCCACCGCCAACCCGTATATAAATACCACCTTTTGAACCCAAAAACCAAACACTCGCTATAATCGCAATGGCCATGGCTCTTCCTCTTCGCAGACTCTCCTCCACCCTCAACAAACCTCTCGCCAGCGCTACTTCCATTTATCATCGCATGTGGATAAAGCAGCTCAACGATCCTCTCGAGACCATCGATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAGTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTCGGCTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTGTCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAACAAGGGAAGGAAGTGTTGTATGACTATGAAGACAGAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCTGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTAGCAACTGCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAGGCATTCGAATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTCGAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAACACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCTATGCAATCAGATGAACAAGTTCAATCTAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGACATAGAAACAATGAAGTATGGCAAATGAAGATGACATTTGGAACTTCTTGTGGAGTATTATTTGGAAACTTCTGGAATTAATAACACGGAATTAGATGTGTTGTTCAATGGATTGTACCGGAGTCTTAGATGAAAATGAGAATTATACTATCAATGGTTTAAATGAAAGAGAAAAGGGAGAAATTCCCTTTCAGCTTGAGAAAATATATTATTGATTTCATGGTGAAAATTCCTCGTGATCGCCAATGTACTACTGGTGTAGCAAAAAGGAGGTCGAACACTTGTGGATTTTTCTATTTGGTGAATTTGTGCCATAATTTGAAATAAATTACCATAATTCCTCCTCTATTTACAAATCCCATCCTCTCTACTTCGAATTTGCAGAAATTGAAGTACCCCATAAATTTTATTATGGCATCACCCTTAAAGTTATTTAATGTAAAGCTAGCACTCGCACCAGTTCTCGAACTTGCAGAGTAATATTTTGTACTATTAGTGTGATGATAATGAGAACCTAGTACAGGAAGAAATATCAATAGAAGGGAGAAGAGAGGGACCCCGAGGAGTTCAAAAGTAAAAAAAAAAGAGGAACAAGTTGTT

Coding sequences of Glyma02g38160

Limit To All Plant Sequences

>Glyma02g38160.3   sequence type=CDS   gene model=Glyma02g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGGCTCTTCCTCTTCGCAGACTCTCCTCCACCCTCAACAAACCTCTCGCCAGCGCTACTTCCATTTATCATCGCATGTCCTCCTCGCTCTCCGCTCAGGAGAAAGACAAATCTCGCGCCGATTGGATAAAGCAGCTCAACGATCCTCTCGAGACCATCGATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAGTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTCGGCTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTGTCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAACAAGGGAAGGAAGTGTTGTATGACTATGAAGACAGAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCTGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTAGCAACTGCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAGGCATTCGAATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTCGAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAACACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCTATGCAATCAGATGAACAAGTTCAATCTAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGACATAGAAACAATGAAGTATGGCAAATGA

>Glyma02g38160.4   sequence type=CDS   gene model=Glyma02g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATGGCTCTTCCTCTTCGCAGACTCTCCTCCACCCTCAACAAACCTCTCGCCAGCGCTACTTCCATTTATCATCGCATGTGGATAAAGCAGCTCAACGATCCTCTCGAGACCATCGATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAGTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTCGGCTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTGTCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAACAAGGGAAGGAAGTGTTGTATGACTATGAAGACAGAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCTGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTAGCAACTGCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAGGCATTCGAATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTCGAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAACACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCTATGCAATCAGATGAACAAGTTCAATCTAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGACATAGAAACAATGAAGTATGGCAAATGA

Predicted protein sequences of Glyma02g38160

Limit To All Plant Sequences

>Glyma02g38160.3   sequence type=predicted peptide   gene model=Glyma02g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMALPLRRLSSTLNKPLASATSIYHRMSSSLSAQEKDKSRADWIKQLNDPLETIDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDRINQAVFPGLQGGPHNHTISGLAVALKQAMTPEFKNYQKQVLSNCSAFAQSLLEKGYELVSGGTDNHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEQVQSKIANLRHEVEDYAKQFPTIGFDIETMKYGK*

>Glyma02g38160.4   sequence type=predicted peptide   gene model=Glyma02g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMALPLRRLSSTLNKPLASATSIYHRMWIKQLNDPLETIDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDRINQAVFPGLQGGPHNHTISGLAVALKQAMTPEFKNYQKQVLSNCSAFAQSLLEKGYELVSGGTDNHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEQVQSKIANLRHEVEDYAKQFPTIGFDIETMKYGK*

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