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Report for Sequence Feature Glyma02g38091

Feature Type:gene_model
Chromosome:Gm02
Start:43421931
stop:43440866
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g38091
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57230AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240 SoyBaseE_val: 1.00E-98ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009556GO-bp Annotation by Michelle Graham. GO Biological Process: microsporogenesis SoyBaseN/AISS
GO:0010440GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0052543GO-bp Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008134GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription factor binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF96Panther AGL21 (AGAMOUS-LIKE 21), TRANSCRIPTION FACTOR JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_B9SMY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mads box protein, putative n=1 Tax=Ricinus communis RepID=B9SMY1_RICCO SoyBaseE_val: 2.00E-119ISS
UniRef100_UPI000233751FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233751F related cluster n=1 Tax=unknown RepID=UPI000233751F SoyBaseE_val: 2.00E-148ISS

Expression Patterns of Glyma02g38091
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g38091 not represented in the dataset
Glyma02g38091 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g38091
ParalogEvidenceComments
Glyma14g36221 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g38091 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g216600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g38091
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g38091
>Glyma02g38091.2   sequence type=transcript   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCAGCATGAAATCAGTAATGGACCGATACAGCAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCATGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGGTGAAATACAAGAGCTAAATCGAAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTCTATGGAACACAAGATGATAACGAAACAAACAGAGATTCTGTTCTGACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAGCAACAACACTACAAGGCATCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGATCCATATACAGGATGTGTGTGTTTCACAATTGCTATCAAGAAAAATGGACTCAGATTTAAACCTCGATGTCTTCGTATAAATGTTGTGGCATATAGACCACAGACTAATTGGCTTAAAGATTTTAATTTGAAATTATTAGAAAAAGTAAAAGCAACCCTAGCATGTATGTAAGAAACAATGAAGCATCTTATGAGAAACTAAGACTCAAATCAAGGAAGAAATTCTTCAAACCGCACAAATGTGTGATTCATTTTACTTGTTTTATTGTGTTAAAATTATTACTGGACTTCAAATGGGTGGAAGCTGTCACATTAAAGCAACCATGATGTGAGTAATACAGATATAAAATCATTGCAATCAAGTGTATATGGATTCCAGCAGAACAAATATAATACTGCTGTGAAATAAATCTAAACGCCTATGCAAGAAAAACAATAATTACAATGCATCCATGTATAAACTCAAGCCCTCAACCAAATTTTCACTTATAGTTCATAAATGAATGGTTAATATCACCCCACAAAGGAAAAGAAGAAAAAAAATAGAACTGCATTAATGCGTTAAAAAAGGAATCTAATGCGTTAAAAAATAGAACTGCATTAATGCGTTAAAAAAAATAGAACTGCATTAATGCGTTAAAAAATAGAACTGCATTAATGCGTTAAA

>Glyma02g38091.3   sequence type=transcript   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGTTTCATCACTTTCCTTATATAGCAGCTAGCTCGTGCTGCTGATGCGCATTCAGCCAGCGCTTTGTCTGTTATAATCAACGCGCTCCTCACGAGTGAATTTCTGGTTCGGAAGGATCTGATTGTTAGGGTTTGGTATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGTAAGGGCGATTTGCAAGAGTTTGTGTGGAGATTGATTTAGATAAACCTATTGTTGGCAAG
Coding sequences of Glyma02g38091
>Glyma02g38091.1   sequence type=CDS   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTAATGGACCGATACAGCAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCATGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGGTGAAATACAAGAGCTAAATCGAAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTCTATGGAACACAAGATGATAACGAAACAAACAGAGATTCTGTTCTGACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAGCAACAACACTACAAGGCATCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGA

>Glyma02g38091.2   sequence type=CDS   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCAGTAATGGACCGATACAGCAAATCAAAAGAAGAACCTTGTCAACTTGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCATGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGGTGAAATACAAGAGCTAAATCGAAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTCTATGGAACACAAGATGATAACGAAACAAACAGAGATTCTGTTCTGACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAGCAACAACACTACAAGGCATCTTCAGGAACTACAAAATTGGGATTGCAATTGCATTGA

>Glyma02g38091.3   sequence type=CDS   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGGTAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGTAAGGGCGATTTGCAAGAGTTTGTGTGGAGATTGATTTAG
Predicted protein sequences of Glyma02g38091
>Glyma02g38091.1   sequence type=predicted peptide   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVMDRYSKSKEEPCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLHGVRMKKDQLLMGEIQELNRKGNLIHQENVELYKKVYGTQDDNETNRDSVLTNGLGIGEDLQVPVNLQLSQPQQQQQHYKASSGTTKLGLQLH*

>Glyma02g38091.2   sequence type=predicted peptide   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSVMDRYSKSKEEPCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLHGVRMKKDQLLMGEIQELNRKGNLIHQENVELYKKVYGTQDDNETNRDSVLTNGLGIGEDLQVPVNLQLSQPQQQQQHYKASSGTTKLGLQLH*

>Glyma02g38091.3   sequence type=predicted peptide   gene model=Glyma02g38091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSKGDLQEFVWRLI*






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