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Report for Sequence Feature Glyma02g38080

Feature Type:gene_model
Chromosome:Gm02
Start:43405577
stop:43410981
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g38080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09920AT Annotation by Michelle Graham. TAIR10: TRAF-type zinc finger-related | chr1:3224863-3226860 REVERSE LENGTH=192 SoyBaseE_val: 2.00E-89ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR16295Panther TRAF-TYPE ZINC FINGER PROTEIN-RELATED JGI ISS
PF02176PFAM TRAF-type zinc finger JGI ISS
UniRef100_B9SMY2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SMY2_RICCO SoyBaseE_val: 4.00E-104ISS
UniRef100_I1JH23UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JH23_SOYBN SoyBaseE_val: 6.00E-148ISS

Expression Patterns of Glyma02g38080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g38080 not represented in the dataset
Glyma02g38080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g38080
ParalogEvidenceComments
Glyma14g36210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g38080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g216500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g38080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g38080
>Glyma02g38080.1   sequence type=CDS   gene model=Glyma02g38080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTGTTTCGGATCAAGACACTAGTATATGCACCCACTGTGATCGGGCTATCCCTGCTGCAAATATTGACTTGCATTATGCTCATTGCTCTCGGAAGCTTGAAAAATGCAAAGTTTGTGGTGACATGGTTCCCAGAAAAAATGCGGAGGATCACTATTTAAGAACCCATGCGCCGGTTTCTTGTTCATTATGCAGTGAGACAATGGAGCGTGATATTTTAGATATCCATAAAGGTGAAAATTGCCCTCAAAGGATTGTCACTTGTGAGTTCTGTGAGTTTCCATTGCCAGCCATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACTGAACTTTGTCACCTTTGTAACAAATATGTTAGACTTCGTGAAAGATTCAGCCATGAAGCTCGATGCAATGGCATCCAAGATAGTTCTGTGGGCACTTCAAGGAATGTGAGAGAAGCTGAGAGAGAGCAAGGTGCTAGAAGAAGGCCTCCACTGCCGCCGCAGAACGACTTCTCAACTAAACGCCTTCTTTTCACAATAGCCATCACTGGTATTGCTGTCATACTGGGATCTTTTTTCCTACAGAAGAAGGCAGAGTCCAGTGACGTGCATTAG
Predicted protein sequences of Glyma02g38080
>Glyma02g38080.1   sequence type=predicted peptide   gene model=Glyma02g38080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVSDQDTSICTHCDRAIPAANIDLHYAHCSRKLEKCKVCGDMVPRKNAEDHYLRTHAPVSCSLCSETMERDILDIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRERFSHEARCNGIQDSSVGTSRNVREAEREQGARRRPPLPPQNDFSTKRLLFTIAITGIAVILGSFFLQKKAESSDVH*






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