SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22930 | AT | Annotation by Michelle Graham. TAIR10: T-complex protein 11 | chr1:8118049-8121854 FORWARD LENGTH=1020 | SoyBase | E_val: 1.00E-125 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| PTHR12832 | Panther | TESTIS-SPECIFIC PROTEIN PBS13 (T-COMPLEX 11 ) | JGI | ISS | |
| PTHR12832:SF2 | Panther | UNCHARACTERIZED | JGI | ISS | |
| UniRef100_B3H5L7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: T-complex protein 11 n=2 Tax=Arabidopsis thaliana RepID=B3H5L7_ARATH | SoyBase | E_val: 7.00E-123 | ISS |
| UniRef100_I1KUN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUN4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g38070 not represented in the dataset |
Glyma02g38070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g216400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g38070.1 sequence type=CDS gene model=Glyma02g38070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCTTCTCCTCGTTGTAACTATTTTGAGACCACCTCTTCTTCATCATATTTACCTCTACATCCCTTTTATGCATTATATGTCATCTCAGACATTGATAAGAAGGATGGCTCGAGAAAGTAAATATAAAGAGTGTGTATGTGCTGCAATATTCACCAAAAACGAGCTCCTGCTGAAACAAAATGACTTGGTCTCGCAGGTGATACATGTGGCAAAGTTTGTATGTCACCAGCATGACATTGAGAGAAGGGAGAAAAAAAAGATGAGTTGGAAGATCGATTGCAGAGGGTATGGAGCAAGACGACAAAGAGCTAAATATCTCAGGCAGACGGGAAGATTGCGTGGTTATGCCCGAGAGAATTGCAATAGAATGTCAAAGCAAGCAAAATATCTTTCCAGAAAACTAGCAAGGTGTTGGAGGCGGTTTGTAAGGCAAAAGAGAACAACATTTACCTTCACAAAAGCATATGATGTGCTGGGGATCAATGAGAAATCTGTCAAGTCAATGCCTTTTGAACAACTTGCTCTTCTGATTGAATCGGCTTCTACTCTTCAGACTGTGAAAAATTTACTTGACTTGGCTCCTGCCAACAATTTGTCTAGCTTGGATAACATTGATAATCTTCTTAAATGGGTTGCTTACCCCAAGAAAAAGGCTACTTCCAAGAGTTTTATGAGAAGCCGGCAGGCAAAGAAAGTAGATTCAGTCAGGGAGTCAAACAATAGCTTAGTTAGGTTATCAAGGTATCCTGTGAGAGTTGTTCTTTGTGGTTATATGATATTGGGTCATCCAGATGCCGTTTTCAGTGGAATGGGAGAATGTGAGAATACTCTAGCCAAATTTGCACAAGAGTTTGTCCAAATGTTTGAGTTGTTGATAAAGATTATACTAGATGGTCCAATACAAAGTTCTGATGAAGAATCTCAGCTTGCTGCTTTTGATAAGGCTTGGTGCTCATACTTGAATTGTTTTTTGCTTGAAGCTTCTATGATTCAAACTTGCAAGTTAACTCTAGAAGGAGCTGGTGGTAAGTTTAGTCATGATATGAAAGCTATTCAGCATCAGGTCTCTGAAGATCAAAAACTTTTGAGAGAAAAGTTGTTGCACTTGAGTGGAGTTGCTGGAATTGATCGTATGGAATATGCATTATCTGAAACAAGATCTACATACTTTGGAGTGAAGGATGATGGAAGTCCAGTGGGGTCTCCAATGATTTTGTCTATGCCCACAAGCCCAACTCCACTTTCTACTACTGCCAGCTCAAGTGAAACAAATATTTCTTATGAGAGTAATGATAGGGCAAGCCGAGTAGTTCGCTCCCTCTTTAAGGAAACAAACACTTCCCCTGGAGAGTCTAACTTCTCTTCACCCAGAACAAGTTCAGATAGTCAGCTTGGCACATCTTCTGAGAAGTTGCTAGTAGAGAATGAGGTTCTTGTAAATGAATTTCTTCACGAGCATCACTATAGTGTTATCGATGAATTTGATGTCTCTGATCACATTCAAAACAATGTTGAGGGGAAAATAAAGCAGACAATGGAAAAGGCCTTTTGGGATGGTATCATGGAAAATGAAGCAGGTGTAGTAGGCCTTGCATCATTTTCTTCTCATGACATGGGAACTGTGGCATGGGTGGTCAATTATGAAATTTATCCCTTATGGTACAGTATATATGCAGGAATATGTGTTGTATATCATTTGTAA
>Glyma02g38070.1 sequence type=predicted peptide gene model=Glyma02g38070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLLLVVTILRPPLLHHIYLYIPFMHYMSSQTLIRRMARESKYKECVCAAIFTKNELLLKQNDLVSQVIHVAKFVCHQHDIERREKKKMSWKIDCRGYGARRQRAKYLRQTGRLRGYARENCNRMSKQAKYLSRKLARCWRRFVRQKRTTFTFTKAYDVLGINEKSVKSMPFEQLALLIESASTLQTVKNLLDLAPANNLSSLDNIDNLLKWVAYPKKKATSKSFMRSRQAKKVDSVRESNNSLVRLSRYPVRVVLCGYMILGHPDAVFSGMGECENTLAKFAQEFVQMFELLIKIILDGPIQSSDEESQLAAFDKAWCSYLNCFLLEASMIQTCKLTLEGAGGKFSHDMKAIQHQVSEDQKLLREKLLHLSGVAGIDRMEYALSETRSTYFGVKDDGSPVGSPMILSMPTSPTPLSTTASSSETNISYESNDRASRVVRSLFKETNTSPGESNFSSPRTSSDSQLGTSSEKLLVENEVLVNEFLHEHHYSVIDEFDVSDHIQNNVEGKIKQTMEKAFWDGIMENEAGVVGLASFSSHDMGTVAWVVNYEIYPLWYSIYAGICVVYHL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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