SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13810 | AT | Annotation by Michelle Graham. TAIR10: Restriction endonuclease, type II-like superfamily protein | chr1:4734088-4735164 FORWARD LENGTH=303 | SoyBase | E_val: 2.00E-86 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF275 | Panther | DNA BINDING / MAGNESIUM ION BINDING / NUCLEASE | JGI | ISS | |
| PF09588 | PFAM | YqaJ-like viral recombinase domain | JGI | ISS | |
| UniRef100_I1MB10 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MB10_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q5XVK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Restriction endonuclease, type II-like protein n=1 Tax=Arabidopsis thaliana RepID=Q5XVK9_ARATH | SoyBase | E_val: 1.00E-83 | ISS |
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Glyma02g37901 not represented in the dataset |
Glyma02g37901 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g36120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g215200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37901.1 sequence type=CDS gene model=Glyma02g37901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAAATACACATCTGTTGAAACTTATTCAGTCCTTCAAGCAAGCTGCCTTCAACACTGGTTTAAAAACTGGCAAGCACTTAGGAGAAACAAATTGACAGCTAGCACTTTTGCTGCTGCTATTGGGTTTTGGCATCGGCAAAGGGTCCAGCTGTGGTTAGAGAAGATTGGTGCTATTGAACCTTTCTCTGGAAACCTTGCCACCTGTTGGAGCAATATCAAAGAGGAGGATGCACTTGAAAGATACAAACTGATAACTGGAAATACCGTGCGTTTTCCTGAATTTCAGGTCTATGATGCACACCCAGAAGACAGCTGGCTAGCTGCTTCACCTGATGGCGTTATTGACAGTATGGTGCATGAGTTGCCTTCTTGTGGAGTACTGGAGATAAAGTGTCCATATTTTGATGGGGACATAAGTAAAGCTTTTCCTTGGTTTCGAATTCCAATTCTCTATATTCCTCAAACTCAGGGTTTAATGGAGATTCTAGGAAGGGATTGGATGGATTTTTATGTTTGGACTCCTAATGTTAGTAGTCTATTCAGGATATACCGCGATGCCGAGTATTGGGATTTAATGAAAATAGCACTATCTGATTTCTGGTGGAAGCATGTCTATCCAGCGAGAGAGTTGTATAGTAGTAATGTTATAACACATCCCCTATTTCAATTAAGATCAATGAGGCCTGCTCCTAGACATGAATTATGTAGAGATATTGTTTATAAAAGCAAACACATTGCTGCTAATTCTAAGTTGTTGATGCGGGAGATACATGGGAAACTGTTAAATTGA
>Glyma02g37901.1 sequence type=predicted peptide gene model=Glyma02g37901 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLKYTSVETYSVLQASCLQHWFKNWQALRRNKLTASTFAAAIGFWHRQRVQLWLEKIGAIEPFSGNLATCWSNIKEEDALERYKLITGNTVRFPEFQVYDAHPEDSWLAASPDGVIDSMVHELPSCGVLEIKCPYFDGDISKAFPWFRIPILYIPQTQGLMEILGRDWMDFYVWTPNVSSLFRIYRDAEYWDLMKIALSDFWWKHVYPARELYSSNVITHPLFQLRSMRPAPRHELCRDIVYKSKHIAANSKLLMREIHGKLLN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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